barSeed - Barley Seed Development Database

Probe CUST_26690_PI390587928

Source Contig U35_12244

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26690_PI390587928	Hv_44K_v2	TGGCACTCAGTTCTGTCATATTGACATTTTATGTACTACCGTATATCTCATATCTCAAGC	704	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.266	1.376	1.241	0.778	0.344	0.329
Raw	25.573	43.487	34.944	35.506	3.283	3.964

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_12244	800	3e-25	705 - 764	100	60 / 60	plus

Contig Sequence (800 bp)

>U35_12244 800 Hv_44K_v2
CTAGTTCCGATNGTAGTCAGGATGCTGAACATTACAAGAAGCATGCGTCTAGATATAGAC
GATGTTCGGATCTCAGGCTCTTGATCCTCTTTAAGACAATAGTTGGCCCTTGCGACCCCT
CGTTGAGCGCTCCCAACAGTTCGAGGGCCCCAATTCTTGAGATTGAACCTGTCACCCCAA
GCGATGCCAAGGCTGTGTGTGACTGTTTCCCTCTCTGGACGTCCAATGGAGTTGGCTCAG
TAGTTTGTGTTCAGGGGGTTGATATTACTTTTGAGTTGGTAAAGACGCATATGCTGATAC
TGAGTAACACCCGTCCTAGCTTGAACTTTGCGCAGCTTGTGAGATGGTGTTTCGACATGC
TGAGCCAGATCCCAGAAGCAGGAGAATGTCACGTTCAGATGAGTGAAAAGCCACGATGGA
TGTAGGCTTCAGCGTGCAAATGAGCTCTCACTCTCGATAGCCCATAGCCTCGACACTTGA
TAGCACATAGCCTCGACACTCGATAGCCCATAGCCTCGACACTCGATAGCCCGTAGCCTC
ATTTGTACATTACTAGTACATGTATATATAGTCAGACGTGACATTCGGTTCAGTTGGTCC
TTGGATAAGTTGTTTTTTGTGGATGGTCCTTGGATAAACGAGCGGTTCTTTTGAATTTTC
TCTTTTCTCAAGCTAGTCTGGAAATCTTCTTATTGCAATTTTATTGGCACTCAGTTCTGT
CATATTGACATTTTATGTACTACCGTATATCTCATATCTCAAGCTAGTATGTCTTATATT
TTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_12244 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None