barSeed - Barley Seed Development Database

Probe CUST_26682_PI390587928

Source Contig U35_24222

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26682_PI390587928	Hv_44K_v2	AGGATCTCCCATGGGTGAGCAAACCAAGAAGCCTCCCAAGGCAAAGCCATCAACACCCTC	478	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12718.1	2466	2e-24	1789 - 1848	100	60 / 60	minus	ABC15064
JLOC1	JLOC1_8541.1	2287	8e-25	607 - 666	100	60 / 60	plus
Harvest21	ABC19096	538	3e-25	479 - 538	100	60 / 60	plus
Harvest35	U35_24222	538	3e-25	479 - 538	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_24222 538 Hv_44K_v2
GCCCATCGCATCGTCTCAGGCAGCCCACTGCGACGGCAACGCCCGCGGCGATGGAGTTTC
GGCACGGTGGCTCGCCGGGAGGCGGCGGGGGCGACGGCAAGCCGCGCGAGAAGTTCTCGG
TGTACCAGAACCCGTCCCTCACCCGCGCGCTCGCCTCCCGCAGCGTCCGCCCCTCCCTCC
CCGTCCTCCTCCTCCTTGCGCTCTCCCCCATCGCATCTGCCTCATCCCTCATGGCCCTGT
CGTCCCGGGAGGGGCAGCTGTTCAAGGTCGCTGGTGGCGCGGGTCTATCCATGGCTGCTG
TCGTGTTTGCTGTTAGGTTGGTGGAGGCAGCTCTGGGTCTTGTCGCACTTTTGACACTGC
CAGCGTTCTTCAGGGCACTGATGCTATACAATGGGAGGAAGGCATTGGCCAAGGAGGACA
AGGTTGTATTGTCCGAACGCCAACTGGGGCTTCTTGGGTTAAAGACCACAGGTTCAGAAG
GATCTCCCATGGGTGAGCAAACCAAGAAGCCTCCCAAGGCAAAGCCATCAACACCCTC

Homology of Contig U35_24222 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None