- Probe CUST_26654_PI390587928
- Source Contig U35_24234
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26654_PI390587928 | Hv_44K_v2 | GTTTGCCGGCATTTTGGAATATATTCACATGAACTTGTGATTTAGAATGTGTGCGTAAAA | 390 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.703 | 2.079 | 1.363 | 0.767 | 0.228 | 0.321 |
| Raw | 11696.703 | 21402.530 | 12435.297 | 10604.377 | 1178.729 | 1778.793 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_1140.1 | 500 | 6e-21 | 448 - 500 | 100 | 53 / 53 | plus | |
| Harvest21 | ABC31688 | 449 | 3e-25 | 377 - 436 | 100 | 60 / 60 | plus | ABC31688 |
| Harvest35 | U35_24234 | 463 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus |
Contig Sequence (463 bp)
>U35_24234 463 Hv_44K_v2 GGGGGAAGCCATCACAAAAACCATTTTCTCTATAAACAGACTAGTAGCTTTAAAGACTTC GAGTAGTATTAGGTAAACAGAGAGATGGCAGCAATTTTTTCTTCCATCGTGTGCAAGATC CTTCTCGTCGTTGTAGCCATGGTTGCCCTCCTGTCCTCCGCCTATGCAAGAGACGACTCA AAATATGGGCAGTGTTTTTCCCGGCCTGATTGCAGCAACTACTGCAAGAATCAAGGATAC CAAAGGGGAGGCGAGCTCATGCCGCCCAACTTCATGGACTGTTGTTGTTTCATATGAACA TTATCGTGCAATGTTCCGTTTTATGTCTAAATAAAATAAAATGCCGTAATAAAAGTGAAA TACATGGATTGCATGCAAATCTGCTGGGAAGTTTGCCGGCATTTTGGAATATATTCACAT GAACTTGTGATTTAGAATGTGTGCGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_24234 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |