barSeed - Barley Seed Development Database

Probe CUST_26650_PI390587928

Source Contig U35_24238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26650_PI390587928	Hv_44K_v2	GAGGTAATGTGTTTGGTCGATAATACACGATTGTTCTCTTGTATAAAATTCATGTACCAC	585	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.293	0.473	0.913	1.540	1.130	1.405
Raw	44.085	105.966	200.960	517.228	134.954	182.338

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358226	1689	2e-24	1581 - 1640	100	60 / 60	plus	None
MLOC	MLOC_72449.2	2056	2e-24	1971 - 2030	100	60 / 60	plus	None
MLOC	MLOC_72449.3	2054	2e-24	1969 - 2028	100	60 / 60	plus	None
JLOC1	JLOC1_48185.1	1249	8e-25	1099 - 1158	100	60 / 60	plus
Harvest35	U35_24238	707	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (707 bp)

>U35_24238 707 Hv_44K_v2
TAACATAATAACAGGCTCTTCCACGGCTGACGAACCGCGAGAGGCTCGTGCAGATGGTGG
ACCCGGCCCTGAAGGGCAGTTCGCCGTCAAGGACCTCATCCAGGTGGCGGCGATCGCGGC
GATGTGCATCCAGACCAAGGCGGAGTACCGGCCGCTGATGACGGACGTGGTGCAGTCGCT
CATCCCCATCGTCAAGAAGAGCCCCGCCATGTCCTGCTCCTCCACGCCGGCGAGGCCCCT
GCAGCACGTCGTCTACATGAGCCCAGCTGCTGGGAGCAACACGTCCTAGTACACGGCACG
TACGTGCGACGGCGGGCTGGATTTGTCAGCGAGCTGCGCTCACCGTGAACTGCACTGCAC
TGCACTGACGCGTCTGAACTGAAGATGTCAGGATTTCTTTTCATGGGTTTGCCCGAGCTA
GTGTCCTCCTGGCTGGCCTGCTAGGTGCTAGCTTTGCTCGAGATGGTGCCATGCTGTATA
GAGTACCACAGGCCCTTCACTTCTTCAAGACATGCTGCATTGCAAGCTAACCTTGCAGGG
GCACTGCATGCGTCGTGATTATATGTGTTTGGTTTTTTCTTTTTTGAGGTAATGTGTTTG
GTCGATAATACACGATTGTTCTCTTGTATAAAATTCATGTACCACATTTAATACGTATAA
AAATGGCAGCTAATTATTAGTTTCCTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None