- Probe CUST_26632_PI390587928
- Source Contig U35_36217
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26632_PI390587928 | Hv_44K_v2 | GTTTCGTGTTTCGTGCTTAGGCCAACTCCAACGCATGACTCAAATGAACGTCTATTTTTT | 330 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.372 | 4.059 | 1.411 | 0.624 | 0.617 | 0.785 |
| Raw | 59.579 | 77.177 | 22.932 | 15.036 | 3.439 | 6.693 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73664.1 | 900 | 7e-23 | 176 - 235 | 98 | 59 / 60 | minus | ABC02813 |
| JLOC1 | JLOC1_49042.2 | 1515 | 4e-23 | 1188 - 1247 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_49042.1 | 1459 | 4e-23 | 1132 - 1191 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02813 | 1182 | 2e-21 | 1081 - 1139 | 97 | 58 / 60 | plus | ABC02813 |
| Harvest35 | U35_36217 | 444 | 3e-25 | 331 - 390 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2223 | 1182 | 2e-21 | 1081 - 1139 | 97 | 58 / 60 | plus |
Contig Sequence (444 bp)
>U35_36217 444 Hv_44K_v2 CTACTATAGGGCGAATTGGGCCCTTCAGAAAATGCTCGAGCGGCCGCTGTCTCCCCAAGG GTCACCGGGGCCTTCGGATTCGTCACCTCCCTCATCTCCTGCTACCAGCAACTCCCGCCC CGTGCCCCTTTGGCCAAAGTCAAGGCGTGAGGAACGGACGCTGCACCACTCTGCCCTTCA CTTCACGTGCATGGAATCTCAGATGTTATTATGCGTAAAGCACGTAGCAGTATAGAATGA TGATGATGTGGATCCTCTGTACGTACGGTTTTTATACATATATGTACACGGTATGTGGGA AGTAGTACTGTAATGGACATGGCCCATCATGTTTCGTGTTTCGTGCTTAGGCCAACTCCA ACGCATGACTCAAATGAACGTCTATTTTTTTAAAATTTTATCCATTTGGGTAGGGCAATG GGTCGGCCTCCGGCTGTTTTCCTG
Homology of Contig U35_36217 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |