barSeed - Barley Seed Development Database

Probe CUST_26626_PI390587928

Source Contig U35_12265

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26626_PI390587928	Hv_44K_v2	GCCAGAAGTACCGTCCAAGATCATATCATGAAATTGTTGGTCAAAACTTTGTAGTACAAT	695	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371216	4530	2e-24	1763 - 1822	100	60 / 60	plus	ABC16982
MLOC	AK366273	4241	2e-24	1512 - 1571	100	60 / 60	plus	ABC16982
MLOC	MLOC_43026.2	2217	2e-24	1516 - 1575	100	60 / 60	plus	None
MLOC	MLOC_43026.3	2154	2e-24	1489 - 1548	100	60 / 60	plus	None
MLOC	MLOC_43026.1	2247	2e-24	1475 - 1534	100	60 / 60	plus	None
JLOC1	JLOC1_27793.3	2272	8e-25	1460 - 1519	100	60 / 60	plus
JLOC1	JLOC1_27793.2	2297	8e-25	1485 - 1544	100	60 / 60	plus
JLOC1	JLOC1_27793.1	2285	8e-25	1473 - 1532	100	60 / 60	plus
Harvest35	U35_12265	758	3e-25	696 - 755	100	60 / 60	plus

Contig Sequence (758 bp)

>U35_12265 758 Hv_44K_v2
CTCTGGTGAGCAGGCTGAGGATACTGAGACTTATAACTCACAGAATCATGAGCTGCTTCA
CAAAGGAGGCTACTTTTCTCGATCAACATCACCGCTGTTTGCTGCTTCTGGATGTCTCAG
CTCATCAAATCCCTCTAAGCTGTTGAAAATGGCAAGAAGAGAAGGATCTTCCTTTTCTTG
CACTCCGGTCTCCACTAGCTCTTATTACAGGCACAGAGGCAGGAATCCCAGCACCGTCGG
TTCATGGCATGCAACAACTGCTGCTTCACTTGATGACGATGGGTTGAACCAACAAGCACC
GCTGAGAAGTCAAAGGTGTGGTATTCCATATTGGTCAAAGGGGAGTAAACAAAGAAGCTG
TTCTCCTTCACTATCTGATACACTTAGACGAAAAGGAAGCAGCCTGTTGTGTGGAAGTCA
GACGATGCACAGAAGGAAGAGATCATCTGGCTCCAACAAATGTGGATATCTTAAAAAATC
TTCCCAAGGCGAGCCACTCTTGGGTGATAGTTGCCATTTTTCTTACTCGTCATTTGATTC
AGCAAGCGAGGGAGTTTCAACCATATTTGGAGAACTAGATTTAGAAGCTTTGAGCCGGTT
GGATGGCAGAAGGTGGTCAAGCTGTAAGAGCCAGGATGGGATTGCTTTGCCTTCCAGTGG
AGCTGATCATGCAGTTTCAGACCAGAGAAGCTTGAGCCAGAAGTACCGTCCAAGATCATA
TCATGAAATTGTTGGTCAAAACTTTGTAGTACAATCAC

Homology of Contig U35_12265 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g10670.1	1175	1e-80	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi4g21057.1	1181	1e-139
Arabidopsis v10	None