- Probe CUST_26625_PI390587928
- Source Contig U35_12267
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26625_PI390587928 | Hv_44K_v2 | GGAAGGTTGATACAATGGCATTATAGTTCACTCCACTATATGACAAATCAGTTGAATTGT | 449 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.213 | 1.429 | 1.189 | 1.031 | 0.442 | 0.254 |
| Raw | 298.117 | 549.903 | 401.611 | 527.624 | 81.223 | 50.967 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62335.1 | 2680 | 2e-24 | 700 - 759 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62334.1 | 1371 | 2e-24 | 700 - 759 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62334.5 | 2317 | 2e-24 | 671 - 730 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62334.3 | 2122 | 2e-24 | 671 - 730 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62334.4 | 2143 | 2e-24 | 671 - 730 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62334.2 | 1458 | 2e-24 | 671 - 730 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62335.6 | 1792 | 2e-24 | 656 - 715 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62334.6 | 1539 | 2e-24 | 656 - 715 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62335.7 | 2517 | 2e-24 | 620 - 679 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62335.4 | 2638 | 2e-24 | 676 - 735 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62335.5 | 2611 | 2e-24 | 676 - 735 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62335.2 | 2776 | 2e-24 | 696 - 755 | 100 | 60 / 60 | plus | ABC23998 |
| MLOC | MLOC_62335.3 | 2657 | 2e-24 | 696 - 755 | 100 | 60 / 60 | plus | ABC23998 |
| JLOC1 | JLOC1_40790.4 | 2468 | 8e-25 | 1729 - 1788 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_40790.3 | 2729 | 8e-25 | 1990 - 2049 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_40790.2 | 2495 | 8e-25 | 1756 - 1815 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_40790.1 | 2702 | 8e-25 | 1963 - 2022 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC23998 | 527 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus | ABC23998 |
| Harvest35 | U35_12267 | 527 | 3e-25 | 450 - 509 | 100 | 60 / 60 | plus |
Contig Sequence (527 bp)
>U35_12267 527 Hv_44K_v2 GCACGAGGCTACTTCGCCGTCGTCCGCAACCAGCAGGCCTTCTCCCGCTTCGTCCGCTTC AACGCCATGCAGGCCGTCGCGCTCGACGTCCTGCTCATCGTCCCCGACCTCCTCGCGCAG TCCTTCGCGCCCTCGGGCGGCGGCATCGGCCTCGACATCTTCACCAGCCTGGAGAACACC GTCTTCCTCTTCCTGCTCGTCTCCCTCGTCTACGGCGGGGGCGCCTGCCTGCTCGGGATC ACGCCGCGCCTGCCCATCGTCGCGGACGCGGCTGAGCGCCAGGTGATGTGAGCCTGCTCC AATCTTACCCACCACAAAGAGAAACGGAATCTGATATACCCCAACATCTCCATGCTTCAT TCATGTTTTTGGACCTTCCTTAATTCACAGGTTTAGTATAGTACAGTCCTTGTTATGATC TTAGTTGTAAATTCAATGGATGGGATCATGGAAGGTTGATACAATGGCATTATAGTTCAC TCCACTATATGACAAATCAGTTGAATTGTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_12267 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g56350.1 | 225 | 2e-53 | |
| Arabidopsis v10 | None |