barSeed - Barley Seed Development Database

Probe CUST_26623_PI390587928

Source Contig U35_12269

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26623_PI390587928	Hv_44K_v2	TGGAAGTCAAACACCCAGATCAGCTCATGAAGTAATAGCACATTTGGTCAGTCGTCTTTC	726	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253003.1	2152	2e-24	1100 - 1159	100	60 / 60	plus	ABC49786
MLOC	MLOC_78111.3	1355	2e-24	883 - 942	100	60 / 60	plus	ABC49786
MLOC	MLOC_78111.1	1249	2e-24	791 - 850	100	60 / 60	plus	ABC49786
MLOC	MLOC_78111.2	1092	2e-24	883 - 942	100	60 / 60	plus	None
MLOC	MLOC_78111.4	1307	2e-24	883 - 942	100	60 / 60	plus	ABC49786
JLOC1	JLOC1_52061.4	457	8e-25	300 - 359	100	60 / 60	plus
JLOC1	JLOC1_52061.3	767	8e-25	356 - 415	100	60 / 60	plus
JLOC1	JLOC1_52061.2	1575	8e-25	1116 - 1175	100	60 / 60	plus
JLOC1	JLOC1_52061.1	1583	8e-25	1172 - 1231	100	60 / 60	plus
Harvest21	ABC21647	789	3e-25	727 - 786	100	60 / 60	plus
Harvest35	U35_12269	789	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (789 bp)

>U35_12269 789 Hv_44K_v2
GCTGCAGGAATTCGGACGAGGAGCTGGTTCATCACAAATCGCTGCCAAGGTAGATCTCGC
GCACATGAAGAACCAAGCAGCCAGGAATGGGCATCGCGTTGTGAGCCCTGCACCAAATGA
GGGAGGCGTGGTGGAATTGCTTGGCCAGGCGGATCTTGGTATCGATCCTTTTGCGGTCAA
GGATAGGCCATCACATGCTGGAGATGTTCATGATCACAAGTGGGTGCCGATTGGATGGTC
AAGGATTGCCGAGCTGAGCCAGAGGGTTCAGTCAGATGCTAGCTGGGAGAATGAACATGT
GCCGATTAGCGACAGTGAGGATGATTACACTGTAGCCGATGTTGCGGCTCCGTACTGGCT
GCGTCCTGGTGGGCCTACATGGTGGTTCCATGTCACAGCAGGCCATCCTTCCGTTGATGC
ATGGTTGAGTAGTGCTCACTGGATGCATCCAGCTATCAGAACTGCACTGAGAGATGAAAG
CCGGCTGATAAGCGATCGGATGAAGTACCTTCTCTATGAGGTTCCAGTTAGAGTTGCAGG
AGGACTGTTATTTGAGCTTCTTGGTCAATCAGTCGGGGATCCAAATCATGAAGAGGAAGA
CATACCAATTGTACTCAGATCGTGGCAGGCGCAGAACTTTCTTTTAACTGCAATGCATGT
GAAAGGCCCTTCAACCAACGTAAATGTTTTAGGAGTGACTGAAGTGCAGGAGTTGCTCAT
TTCTGGTGGAAGTCAAACACCCAGATCAGCTCATGAAGTAATAGCACATTTGGTCAGTCG
TCTTTCGCG

Homology of Contig U35_12269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47460.2	342	1e-138	protein\|expressed protein
Brachypodium v1_2	Bradi2g45840.1	561	4e-147
Arabidopsis v10	AT1G29820.1	540	2e-85	Magnesium transporter CorA-like family protein \| chr1:10438219-10440625 FORWARD LENGTH=540