barSeed - Barley Seed Development Database

Probe CUST_26620_PI390587928

Source Contig U35_24242

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26620_PI390587928	Hv_44K_v2	TGCTAGCCTGGTAGTGTGTAGATATAACAGATGAAATGTGTCGTAGCAAAACAATCTTTG	842	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.131	1.422	1.404	1.220	0.397	0.548
Raw	291.196	586.902	490.350	669.550	77.626	115.470

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356147	1573	2e-24	1358 - 1417	100	60 / 60	plus	ABC23245 ABC39525
MLOC	MLOC_75280.1	552	2e-24	266 - 325	100	60 / 60	plus	ABC23245 ABC39525
JLOC1	JLOC1_50212.1	533	8e-25	209 - 268	100	60 / 60	plus
Harvest21	ABC23245	1022	3e-25	121 - 180	100	60 / 60	minus	ABC23245
Harvest35	U35_24242	1022	3e-25	843 - 902	100	60 / 60	plus

Contig Sequence (1022 bp)

>U35_24242 1022 Hv_44K_v2
TTTGATTTCATCCTAAACAATCAAGGTTAAATACCGAAACATCAAGGACGGGAGGTTATA
TGCAATAAAGGTGTTGAGCAAACCATACATGTTGAAAGTGCGTGTTGTGCGGTCAGAAAC
GGCCATGACGGATGTTCTTCGGGAAGTATCCCTCATGAAAATGTTGGATCATCCCAATAT
AGTAAATCTCATTGAGTTCTTGAGTATGTTGAGGGGAAAATGGTGTGCGATAACGGTATA
GGTTTAGGAGAAGCTACTTCCAGGAAGTACTTGCGGGACATTGTCTCTGGTGTTATGTAT
CTTCACTCTCATAACATTATTCATGGTGATATTAAACCGGACAACCTCTTGGTCACAAGT
ACTGGCAATGTGAAGATAGGGGACTTCAGCGTTAGCCAGATATTTGAGGATGACGATGAT
ATGCTTTGGAGGTCTCCAGGTACTCCAGTTTTCACTGCACCAGAGTGCTGTCAAGGTTCA
GCCTACCATGGCAGAGCAGCTGATACATGGACAGTCGGTGTTACCCTGTATTACATGATC
ACCGGGAAATATCCATTCCTTGGAGAAACTCTGCAGGAAACATACGACAAGATCGCCAAT
GATCCGGTGGAAATACCCGGCGACACGAGCCCCCAGCTCGCCGACTTGATGCAGAGGCCG
CTCTACAAAGATCCGGGAGATCGTATGACCCTGCAGGCCGCGGCCGCGCATCCTTGGGTT
GCCGGGGCTGAGGGCCCGGTCCCTGAGTTTGTGTGTAGGTGCGGTTTCGGTCGCCGGGAC
AGGAATGATTCGCAGGAGGCGGTGCAATAACAGAGAGCCAGCCTTTTTGGTCATTGCTGT
GATGCTAGCCTGGTAGTGTGTAGATATAACAGATGAAATGTGTCGTAGCAAAACAATCTT
TGTGTTTTGAGTTTTGGGTACAGAGTAGAGCGCCGGTCGGTTTTCCTGTCGTTTTTTCTT
TATCGCAAGCTTTACCCACATCGCCTTGTGTTGTGGCGGCGAATGTTTTATTACTTGTTG
AA

Homology of Contig U35_24242 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50330.1	427	3e-118	protein\|CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g11340.1	427	1e-123
Arabidopsis v10	AT3G45240.1	396	1e-87	\| Symbols: GRIK1, ATSNAK2 \| geminivirus rep interacting kinase 1 \| chr3:16570774-16572902 REVERSE LENGTH=396