barSeed - Barley Seed Development Database

Probe CUST_26617_PI390587928

Source Contig U35_24246

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26617_PI390587928	Hv_44K_v2	TAGTCATGATCATTGCTAGCCTTCTAGATTTCTTTTCTCTTATCAGGGGGTATCGATTTC	482	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.946	2.432	2.047	1.158	0.344	0.257
Raw	232.547	970.559	673.747	614.805	63.522	52.366

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40632.1	502	7e-23	239 - 298	98	59 / 60	plus	None
JLOC1	JLOC1_26548.1	398	4e-23	236 - 295	98	59 / 60	plus
Harvest35	U35_24246	563	3e-25	483 - 542	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_24246 563 Hv_44K_v2
GCAATGGCGGCAGCAGTGCGTTCGGGTCGTCGCTCTTCTTCTGGCCGTTCCTGCCGCTCT
TCTGGCCGCCGCCGTTTGGGCTCCCGTCGCCCGCCGCGCCGGGAGCCGCCGGAGGGACGG
TGTCGTTCCCGTGGCCATTCCACGTGCCGGAGTGGCTGGTGCCGTTCCTGCAGCCGCCCT
TCATGCCTTTCCCGCTCTACCAGCCGGCACCGGGGTCATCATCGGCGCCGCCCCCGTTCC
AACGTTTCCCGCCACCACAACGATCGGCTGCCCGGCCATAAAACGGCCGGCCGGCTTCAG
AATCAGAACTTCAGGGAGAAGCTTGACAAGACACGAGATTTCAGCCTTCTTGCCAAGATC
AATTGTTAGAAATTTAGTTTCTTTATTGCTTGACTGCTTGTCATGCATGCTAGGTGTTGC
CGCCATTGGCATGGTGCTCATTGACCTGATAAATGTGCCTGCATGTGGTACGATCGAATT
CGTAGTCATGATCATTGCTAGCCTTCTAGATTTCTTTTCTCTTATCAGGGGGTATCGATT
TCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None