- Probe CUST_26607_PI390587928
- Source Contig U35_36224
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26607_PI390587928 | Hv_44K_v2 | CACTTCCCAAGAGGCCGCTCTCTATTGATACCTATGATGTGTTTAAGTTTGAGGAATTTG | 266 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.186 | 1.329 | 1.111 | 1.182 | 0.347 | 0.499 |
| Raw | 86.357 | 152.616 | 112.750 | 202.835 | 20.136 | 30.192 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54964.1 | 727 | 7e-23 | 202 - 261 | 98 | 59 / 60 | plus | ABC48409 |
| MLOC | MLOC_54964.5 | 1615 | 7e-23 | 360 - 419 | 98 | 59 / 60 | minus | ABC48409 |
| MLOC | MLOC_54964.2 | 2486 | 7e-23 | 436 - 495 | 98 | 59 / 60 | minus | ABC48409 |
| MLOC | MLOC_54964.3 | 2710 | 7e-23 | 364 - 423 | 98 | 59 / 60 | minus | ABC48409 |
| MLOC | MLOC_54964.4 | 2566 | 7e-23 | 364 - 423 | 98 | 59 / 60 | minus | ABC48409 |
| JLOC1 | JLOC1_35422.3 | 4865 | 4e-23 | 2221 - 2280 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35422.2 | 4695 | 4e-23 | 2051 - 2110 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_35422.1 | 4736 | 4e-23 | 2092 - 2151 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_36224 | 833 | 3e-25 | 267 - 326 | 100 | 60 / 60 | plus |
Contig Sequence (833 bp)
>U35_36224 833 Hv_44K_v2 GGGCGAATTGGGCCCTTTCGATGATGCTCGAGCGGCCGCTGATAAGCTTGACATCGGTGA AACAAGTGAAAGCAAAACGTCTCTCCTTGCCAAGGAACCAACTAAGAGATCTTCAGTTGA TGCTTCCAACAGCACAAGCAAAAAAGAAGAAACCAGTCCACTTAGAATCAGTCCACTCAG AGCATCTCTCCAAGATGATGTGGGGATGAGGCGTGCCCCTAGTGCTACAGAAATCACCAA TCTGGAGAGACCATCAACTCCACCTCCACTTCCCAAGAGGCCGCTCTCTATTGATACCTA TGATGTGTTTAAGTTTGAGGAATTTGAGGACAAGGGCACTCCTTTGATGCCAAAGTCTGA GCATCAACCGAAGGTGAAGAAACCAAAGGCTGCTTCTGCATCTAAATCTGTTAAGGGCCC TTGTGTGGACAAAAATGCAACACGGTTGATGAGGGGCATGCCATCCGCACGAAGAAAAGG CTTGCTGGACTGCTTGAACTCACAGCACAATGTTGCGCAGGGGCCCCGCAGGGGCTCTCG AAGTGACCCTCTAGGCAAAAAGAAGAGGAAGCTGGACACCACCTCGGTGGCAGTTCTTCA GTACTAATTATTGTTCTAGTCAGGTTTGAATGTCTAAAATCTTTTTGCTGTACGTAGTTT CCAATCCATCTCTTTTCTTGAGGACCAACTCAGGATGCAAAAGAGCTTAAGAGTTTAGGT TAAGTTTTTTTTCTTCCTGCTTTCCGATGTGGAATTCCTTGCAGCGGCCGCTCAAGAGCG TGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAGGGTTTCCATGATCTAC
Homology of Contig U35_36224 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |