barSeed - Barley Seed Development Database

Probe CUST_265_PI415269222

Source Contig AM182059

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_265_PI415269222	Hv_44K_v2	ATGCATGTGCCTGTGTCCATCTGATTGCATACATACATCAGATAACGTGCCCTTGTTTTG	1237	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.175	3.574	2.262	1.634	0.434	0.490
Raw	162.971	881.133	432.494	488.275	47.426	57.092

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56286.1	3563	6e-24	114 - 172	100	59 / 59	minus	ABC33830
MLOC	MLOC_56286.3	1730	6e-24	5 - 63	100	59 / 59	minus	ABC33830
MLOC	MLOC_56286.2	1915	6e-24	111 - 169	100	59 / 59	minus	ABC33830
JLOC1	JLOC1_36390.2	1775	3e-24	1591 - 1649	100	59 / 59	plus
JLOC1	JLOC1_36390.1	1365	3e-24	1181 - 1239	100	59 / 59	plus
Harvest21	ABC33830	615	1e-24	538 - 596	100	59 / 59	plus	ABC33830
Harvest35	U35_38044	615	1e-24	538 - 596	100	59 / 59	plus

Contig Sequence (1297 bp)

>AM182059 1297 Hv_44K_v2
CATGATGATCGGTGTAGCAGGCTTCCGCCGGCACGCGGGCCAGCTCTTGAGTAAAAGCAA
CGGGTTTATTGCGGCGTCCCTGTCCGCGGCAAGCTGCGCGGACGAGGTGGAGAAGGCCGA
GGGGGCGGGGTGCCGGGACGACGCGGCGGCGCTGCGGCTCAAGTGGATTGCCATGGCGGC
GATACTGGTGTCCGGGGTGATGGGCGTGGGCCTACCGCTTGCCGGGCGGAAGCGGCGGAC
GGTGGAGACCGGCAGCGCCGTCTTCGTGGCCGCCAAGGCTTTCGCGGCCGGCGTGATCCT
GGCCACAGGGTTCGTCCACATGCTGCACGACGCCGAGCACGCGCTCTCCAACCCCTGCCT
CCCGGCTGCGCCCTGGCGCCGGTTCCCGTTCCCCGGCTTCGTCGCCATGCTCGCTGCTCT
CGCCACGCTGGTGCTCGACGTCCTGGTAACCAGGTTCTACGAGACCAAGCACCGCGCCGA
GGTAGCTCGGGTCAAGGCTGACGCCGCTGCCGCACTCGCCGCCGCGTCCACCTCCGCCAG
CGACGAAGACATCACTGTGGTCACCGTCGTCCAGAGTGAGCACAAGGCCCCGCTCTTGCA
AGCGCACTCCCATTCCCACGCGCAATCGCATGGTCACGAGCTGGTGCAACCACAAGGACG
CGAGGGGGAGGTGTCAGAGCACGTGCGCTCCGTCGTGGTATCACAGATACTGGAAATGGG
GATTGTGTCGCACTCCGTGATCATTGGGCTGTCGCTTGGGGTGTCTCGGAGCCCCTGCGC
AATCAGGCCATTGGTGGCAGCGCTCTCATTTCACCAGTTCTTCGAGGGGTTTGCCCTTGG
TGGGTGCATCGCGCAGGCTCAGTTTAAGAACCTTTCGGCAGTCATGATGGCCTCCTTTTT
TGCCATTACAACACCAACTGGTATCGCTGCTGGGGCTGGTTTGTCCTCATTTTACGACGC
AAATAGCCCCAGGGCTCTAGTGGTGGAAGGCATCCTCGACTCTGTGTCGGCCGGCATACT
CATATACATGGCGCTGGTGGATCTCATCGCAGCCGATTTCTTGGGTGGGAAGATGACAGG
GTCGGCACGACAACAAGTGATGGCATATGTTGCGCTGTTCCTAGGTGCACTCTCCATGTC
ATCGCTTGCAGTCTGGGCCTGAACTGGTTTAATGAGATGGAGGTAGCGGACGATCTCTAC
GTCTCAACATACTGCCTCTGATACATGTACATAACTAATGCATGTGCCTGTGTCCATCTG
ATTGCATACATACATCAGATAACGTGCCCTTGTTTTG

Homology of Contig AM182059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g10940.1	385	1e-150	protein\|metal cation transporter, putative, expressed
Brachypodium v1_2	Bradi2g33110.1	389	7e-173
Arabidopsis v10	AT1G10970.1	408	6e-89	\| Symbols: ZIP4, ATZIP4 \| zinc transporter 4 precursor \| chr1:3665201-3666933 REVERSE LENGTH=408