- Probe CUST_26593_PI390587928
- Source Contig U35_48204
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26593_PI390587928 | Hv_44K_v2 | GTCTCGAGGCACATTCTTTCCTGTACACAGATATTTTGTTGTAGCTTATTTTATATCTGA | 44 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.688 | 1.476 | 1.063 | 0.816 | 0.383 | 0.412 |
| Raw | 1619.800 | 2106.817 | 1408.110 | 1674.267 | 277.655 | 329.178 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376361 | 2586 | 7e-23 | 2468 - 2528 | 98 | 60 / 61 | plus | None |
| MLOC | MLOC_22406.1 | 375 | 7e-23 | 126 - 186 | 98 | 60 / 61 | plus | None |
| JLOC1 | JLOC1_15537.1 | 277 | 4e-23 | 121 - 181 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_48204 | 230 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus |
Contig Sequence (230 bp)
>U35_48204 230 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAACAAAAAAGTCACTCAGCTCTGTTTCAGATATAAAATAAG CTACAACAAAATATCTGTGTACAGGAAAGAATGTGCCTCGAGACTTAACAGCATATCCAT AAAAAGGTGTATACATCTAGCGTCAATTAAAAGAAAAAAGAATACGCATGTCCCTGATTA AGATGGAGTCGATAAAAAGGATTCATGTCTGATGGGGGGGGGGGGGGGGG
Homology of Contig U35_48204 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |