- Probe CUST_26586_PI390587928
- Source Contig U35_48209
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26586_PI390587928 | Hv_44K_v2 | TATGGTAAGTTCATCTTCCTGTGTCATGCCTGAGGCCATTGGCCAAGACAAGTTTCTTCT | 2 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.304 | 4.370 | 1.247 | 0.743 | 0.174 | 0.332 |
| Raw | 198.135 | 334.125 | 79.632 | 80.117 | 5.077 | 12.914 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_32111.2 | 1419 | 2e-24 | 1233 - 1292 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_21007.2 | 1438 | 8e-25 | 1224 - 1283 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48209 | 186 | 3e-25 | 3 - 62 | 100 | 60 / 60 | minus |
Contig Sequence (186 bp)
>U35_48209 186 Hv_44K_v2 ACAGAAGAAACTTGTCTTGGCCAATGGCCTCAGGCATGACACAGGAAGATGAACTTACCA TACCGTGGTTCCTGACAATCCAGTAAACAGCCATTACCAGACATTCACCATCTCCGTCTG ATCGAAGTAGCACCCGGTCGGCCCATCCTGAGGGAGCAGGGCCAGCATGACCGGCCCCCT CGCGCC
Homology of Contig U35_48209 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |