barSeed - Barley Seed Development Database

Probe CUST_26583_PI390587928

Source Contig U35_24252

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26583_PI390587928	Hv_44K_v2	TGAGGTTACTTCTTGTTTGCCTATGATATGACGAAAGCTGCATTCAGAAAATCTACCTTA	563	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.477	0.512	1.364	2.162	1.162	1.150
Raw	77.731	135.189	308.812	748.308	146.254	155.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364457	2250	2e-24	2171 - 2230	100	60 / 60	plus	None
MLOC	MLOC_5663.1	2440	6e-24	2288 - 2346	100	59 / 59	plus	None
JLOC1	JLOC1_3659.1	2422	3e-24	2327 - 2385	100	59 / 59	plus
Harvest35	U35_24252	660	3e-25	564 - 623	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_24252 660 Hv_44K_v2
CTGGCCCTTATCTACCTCGGCTCGACCATGATACCCAACATCTGGATGGCCTTCAAGTTC
ACCGGCGCAACGACGGGGCTGGCATTGGGCTTCATGTTCCCAGCCCTCGTGGCGCTGCGG
CTGGACAAGGAGGGGGAGTGCCTGGGGCGTGGCGAGAGGCTCCTGTCGCTCGGAATGCTG
GGGCTGGCCATCGTCGTGAGCGTCGTTGGGGTCGTGGGAAACGTGTACAGCCTGAGGAGC
AAGTCTGAGTGAGTGATGGATTGATCATCAGGATTACTATATTTCTAGGGCTTGTTATAC
AGAGACTGTATTACCACTGCCAGAATACACTAGTTAGCAGGTACACCAGTTCCAGCTGAG
CTGCTGAGCAAAGCTCATCATACTACACATTTTGTTCACCTACAGGGTTGTTTCATATGT
TGTTGGTGGGCATTCTTGTACTTTTGGACCATATTCTTTGATGTATTTTTCTTCTTCTAT
TTGTTCTTAGATATATATATATACACATGTGTATCCTGGGTCTTCTTTCTGATCGAGGCA
ATGAATCAACCCGGGTTTTGTACTGAGGTTACTTCTTGTTTGCCTATGATATGACGAAAG
CTGCATTCAGAAAATCTACCTTATTAATGAATTTTGCATTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_24252 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None