barSeed - Barley Seed Development Database

Probe CUST_26579_PI390587928

Source Contig U35_24256

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26579_PI390587928	Hv_44K_v2	ACCAATCCAAGCTGGATGGAACTGAGCACATCGCTGTTGCCAAGGGCGATATCGGCGATG	175	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62417.1	2292	2e-24	1024 - 1083	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_62417.2	2260	2e-24	1024 - 1083	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_62417.3	2294	2e-24	1024 - 1083	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_62417.4	2294	2e-24	1024 - 1083	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
JLOC1	JLOC1_40846.8	2314	8e-25	1232 - 1291	100	60 / 60	plus
JLOC1	JLOC1_40846.7	2298	8e-25	1216 - 1275	100	60 / 60	plus
JLOC1	JLOC1_40846.6	2216	8e-25	1134 - 1193	100	60 / 60	plus
JLOC1	JLOC1_40846.5	2274	8e-25	1192 - 1251	100	60 / 60	plus
JLOC1	JLOC1_40846.4	2201	8e-25	1119 - 1178	100	60 / 60	plus
JLOC1	JLOC1_40846.3	2219	8e-25	1137 - 1196	100	60 / 60	plus
JLOC1	JLOC1_40846.1	2176	8e-25	1094 - 1153	100	60 / 60	plus
Harvest21	ABC45932	286	3e-25	176 - 235	100	60 / 60	plus
Harvest21	ABC19266	473	3e-25	176 - 235	100	60 / 60	plus
Harvest35	U35_24256	474	3e-25	176 - 235	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_24256 474 Hv_44K_v2
AAAGACGGCTCGATGGCATCAACGCCTGCGCTGAAACAGATGGCTTTGGAGCATGATATC
CCGATTGTCTCGATCGCTGATCTCATCCGGTACAGGAGGAAAAGGGAGAAACTGGTGGAA
CTGATCGCTGTATCTCGTTTGCCTACCAAATGGGGCCTCTTCCGCGCCTACTGCTACCAA
TCCAAGCTGGATGGAACTGAGCACATCGCTGTTGCCAAGGGCGATATCGGCGATGGGGAA
GACGTGCTCGTGAGGGTGCACTCGGAGTGCCTGACCGGCGACATCCTCGGCTCTGCCCGC
TGCGACTGCGGCGAGCAGCTGGACCTCGCGATGCAGCTGATCGAGAAGTCCGGCCGCGGA
GTACTCGTGTACCTGCGCGGCCATGAAGGCCGCGGCATCGGGCTCGGCCAGAAGCTCCGC
GCCTACAACCTGCAGGACCAAGGCAGCGACACGGTGGAGGCCAACGTCGAGCTC

Homology of Contig U35_24256 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38570.1	537	4e-99	protein\|riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g23220.1	528	2e-103
Arabidopsis v10	AT5G59750.2	543	3e-88	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II \| chr5:24073397-24075411 FORWARD LENGTH=543