barSeed - Barley Seed Development Database

Probe CUST_2656_PI390587928

Source Contig U35_39050

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2656_PI390587928	Hv_44K_v2	GTGGAGCAATGCATGCTTGTTGGATGTGTACTTGTACTCTGGTGTAACCGATGTAAAAAA	31	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.218	5.097	1.471	0.699	0.259	0.358
Raw	3473.477	4720.482	1103.160	862.059	104.617	163.038

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60073.1	740	3e-22	1 - 56	100	56 / 56	minus	ABC01519 ABC01529
MLOC	MLOC_60073.2	1165	3e-22	1 - 56	100	56 / 56	minus	ABC01519 ABC01529
JLOC1	JLOC1_39142.1	1337	8e-25	1107 - 1166	100	60 / 60	plus
Harvest21	ABC35104	423	3e-25	32 - 91	100	60 / 60	minus
Harvest21	ABC01529	1038	3e-25	937 - 996	100	60 / 60	plus	ABC01529
Harvest21	ABC01519	245	3e-25	146 - 205	100	60 / 60	plus	ABC01519
Harvest35	U35_39050	423	3e-25	32 - 91	100	60 / 60	minus
Harvest35	U35_153	1051	3e-25	948 - 1007	100	60 / 60	plus
Harvest35	U35_61	245	3e-25	146 - 205	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_39050 423 Hv_44K_v2
TTTTTTTTAAGCTTCAAAAGGGTATTCATTTTTTTTTACATCGGTTACACCAGAGTACAA
GTACACATCCAACAAGCATGCATTGCTCCACAATTACATACCATCATCCACGGGAAAAAT
AATCTAATTCCACCAGCGATCTTCTTCCCCGTGGTAGCACACTCCTCGGATTTGTTGCTA
ACTCCCAACGTGTTCCTTACTTGGGGAAGATGGGGTCGGTGTTGACGCATCCTGGCCGGT
GTACTCGGCCTGGAACCACGCGCCCATGACGGCGAGCATGGCCAGGCGGCCGTTCTTGAT
CTCCTTGGTGCGCAGCTCCTTGAGCTTCTCGGGCGAGCCGGTGCCGTATCCGAGCGGGTC
AAACCACAGACCACCGGGGTACCCGACGTCGGTGCCGGTGAGCTTGTTGTTGCGGACGCG
TGG

Homology of Contig U35_39050 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None