barSeed - Barley Seed Development Database

Probe CUST_26561_PI390587928

Source Contig U35_136

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26561_PI390587928	Hv_44K_v2	GTAAGTTAGAAGGGGAACGCGAAATGACTTTAGGTTTTGTTGATTTATTGCGCGATGATT	1296	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.482	4.085	1.017	0.996	0.609	0.672
Raw	32345.700	31401.033	7042.940	11100.450	2258.763	2814.230

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_136	1785	3e-25	1297 - 1356	100	60 / 60	plus

Contig Sequence (1785 bp)

>U35_136 1785 Hv_44K_v2
GCATGGTTTAATAACGAACCGTGTTAACTTACCATAACAACAACTCAATTCCTATCGAAT
TCCTATAGTGGAATTCCTATAGGATAGAACATACACAGGGTGTACGCATTATATATGAAT
GAAACATATTCATTAACCTAAGCATGCCCTCAATTTTCTTTAATGAGTTGATATTATATT
AATTGAATATCCTTTTTGTTTTACGAGATTTTTGCTAAAGTTTCATTTACGCCTAATTAA
CATCGAGTAGACCCTGTTATTGTGAGAATTCTTAATTCAAGAGTTGTAGGGAGGGACTTA
TGTCACCACAAACAGAAACTAAAGCAGGTGTTGGATTTCAAGCTGGTGTTAAAGATTATA
AATTGACTTACTACACCCCAGAGTATGAAACTAAGGATACTGATATCTTGGCAGCATTCC
GAGTAAGTCCTCAGCCTGGGGTTCCGCCCGAAGAAGCAGGGGCTGCAGTAGCTGCCGAAT
CTTCTACTGGTACATGGACAACTGTTTGGACTGATGGACTTACCAGTCTTGATCGTTACA
AAGGACGATGCTATCACATCGAGCCTGTTGCTGGGGAAGACAGCCAATGGATCTGTTATG
TAGCTTATCCATTAGACCTATTTGAGGAGGGTTCCGTTACTAACATGTTTACTTCCATTG
TGGGTAACGTATTTGGGTTCAAAGCCCTACGTGCTCTACGTTTGGAGGATCTACGAATTC
CCCCTACTTATTCAAAAACTTTCCAAGGCCCGCCTCATGGTATCCAAGTTGAAAGAGATA
AGTTGAACAAGTATGGCCGTCCTTTATTGGGATGTACTATTAAACCAAAATTGGGATTAT
CCGCAAAAAATTATGGTAGAGCGTGTTATGAGTGTCTACGTGGTGGACTTGATTTTACCA
AAGATGATGAAAACGTAAACTCACAACCATTTATGCGCTGGAGAGACCGTTTTGTCTTTT
GTGCCGAAGCTATTTATAAATCACAGGCCGAAACCGGTGAAATCAAGGGGCATTACTTGA
ATGCGACTGCGGGTACATGTGAAGAAATGATTAAGAGAGCTGTATTTGCGAGAGAATTAG
GGGTTCCTATTGTAATGCATGACTACTTAACCGGGGGATTCACCGCAAATACTACTTTGG
CTCACTATTGCCGCGACAATGGCTTACTTCTTCACATTCACCGTGCAATGCATGCAGTTA
TTGATAGACAGAAAAATCATGGTATGCATTTCCGTGTATTAGCTAAAGCATTGCGTATGT
CTGGGGGAGATCATATCCACTCCGGTACAGTAGTAGGTAAGTTAGAAGGGGAACGCGAAA
TGACTTTAGGTTTTGTTGATTTATTGCGCGATGATTTTATTGAAAAAGATCGTGCTCGCG
GTATCTTTTTCACTCAGGACTGGGTATCCATGCCAGGTGTTATACCGGTAGCTTCAGGTG
GTATTCATGTTTGGCATATGCCAGCTCTGACCGAAATCTTTGGGGACGATTCTGTATTAC
AATTTGGTGGAGGAACTTTAGGACATCCTTGGGGGAATGCACCTGGTGCAGCAGCTAATC
GAGTGGCTTTAGAAGCTTGTGTACAAGCTCGTAACGAAGGGCGTGATCTTGCTCGCGAAG
GTAATGAAATTATCCGAGCAGCTTGCAAATGGAGTCCTGAACTAGCCGCAGCTTGTGAAG
TATGGAAGGCGATCAAATTCGAGTTCGAGCCGGTAGATACTATCGATAAGAAGGTCTAAA
AAAAAAAAAACAAAATAAAAAAAAAAAAAAAAAACTCGAGGGGGG

Homology of Contig U35_136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g21268.1	485	protein\|ribulose bisphosphate carboxylase large chain precursor, putative, expressed
Brachypodium v1_2	Bradi3g27325.1	459
Arabidopsis v10	ATCG00490.1	479	\| Symbols: RBCL \| ribulose-bisphosphate carboxylases \| chrC:54958-56397 FORWARD LENGTH=479