barSeed - Barley Seed Development Database

Probe CUST_26560_PI390587928

Source Contig U35_137

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26560_PI390587928	Hv_44K_v2	ACATCATGACACCATAATCCACTGATGTTACCTCGAATGTTCCAACTCGCACGGAATAAC	1393	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78867.2	4650	2e-24	4452 - 4511	100	60 / 60	minus	ABC00319 ABC00326 ABC00873 ABC39134 ABC39277
JLOC1	JLOC1_52556.3	2091	8e-25	1832 - 1891	100	60 / 60	minus
JLOC1	JLOC1_52556.1	2531	8e-25	2272 - 2331	100	60 / 60	minus
Harvest21	ABC46964	330	3e-25	71 - 130	100	60 / 60	plus
Harvest21	ABC39277	409	3e-25	64 - 123	100	60 / 60	plus	ABC39277
Harvest21	ABC00326	2282	3e-25	2155 - 2214	100	60 / 60	minus	ABC00326
Harvest21	ABC00319	638	3e-25	579 - 638	100	60 / 60	plus	ABC00319
Harvest21	ABC39134	174	6e-22	19 - 78	97	58 / 60	plus	ABC39134
Harvest35	U35_453	2289	3e-25	2160 - 2219	100	60 / 60	minus
Harvest35	U35_137	1453	3e-25	1394 - 1453	100	60 / 60	plus

Contig Sequence (1453 bp)

>U35_137 1453 Hv_44K_v2
GATTGAGGAGGGTATCTTCGAGGTAAAGGCCACTGCCGGAGATACCCACCTGGGAGGTGA
GGACTTCGACAACCGGATGGTCAACCACTTCGTTCAGGAATTCAAGAGGAAGAACAAGAA
GGACATCAGCGGCAACCCGAGGGCGCTCCGGCGGCTGAGGACAGCGTGCGAGAGGGCGAA
GAGGACGCTTTCCTCCACCGCCCAGACCACCATCGACTTCTACACAACCATCACCCGTGC
TCGGTTCGAGGAGCTCAACATGGACCTCTTCCGCAAGTGCATGGAGCCCGTCGAGAAGTG
CCTCCGCGATGCCAAGATGGACAAGAGCACCGTGCACGATGTTGTCCTCGTCGGAGGATC
CACCCGTATCCCCCGTGTGCAGCAGCTCCTCCAGGATTTCTTCAACGGCAAGGAGCTCTG
CAAGAGCATCAACCCTGACGAGGCCGTCGCGTACGGAGCCGCCGTTCAGGCTGCCATCCT
CACCGGCGAGGGCAACGAGAAGGTGCAGGACTTGCTCCTGCTCGACGTCACACCGCTCTC
GCAGGGCCTGGAGACAGCCGGAGGCGTCATGACCATCCTGATCCCGAGGAATACCACAAT
CCCCACCAAGAAGGAGCAGGTCTTCTCCACTTACTCAGACAACCAGCCCGGCGTGCTGAT
CCAGGTGTACGAGGGCGAGAGGACGAGGACCAAGGACAACAACCTGCTCGGTAAGTTCGA
GCTGTCTGGCATCCCGCCGGCGCCCAGGGGAGTGCCCCAGATCACGGTGACCTTCGACAT
CGACGCGAACGGCATCCTGAACGTGTCCGCGGAGGACAAGACCACCGGGCAGAAGAACAA
GATCACCATCACCAACGACAAGGGGCGGCTGAGCAAGGAGGAAATCGAGAGCATGGTGCA
GGAGGCTGAGAAGTACAAGTCCGAGGATGAGGAGCACAAGAAGAAGGTGGAGTCCAAGAA
CGCCCTGGAGAACTACTCTTACAACATGCGCAACACCATCAAGGACGAGAAGATCGCCTC
CAAGCTGCCGGCCGACGACAAGAAGAAGATCGAGGAGGCCATCGATGCTGCCATCCAGTG
GCTGGACACGAACCAGCTTGCTGAGGCGGACGAGTTTGAAGACAAGATGAAGGAGCTGGA
GGCCCTGTGCAACCCCATCATCGCCAAGATGTACCAGGGTGCTGGTGCCGACATGGAGGG
TGGCATGGACGATGACACCCCTGCTGCATCCGGCGGCCCTGGCCCCAAGATCGAGGAGGT
CGACTAAACAGTCGATGTTCTGTGGCAGAGGCGGTGAAGCCTGCTGCTAGTTATTATTAT
ATCGTGTCTGTGTTATCTGAGACTTGGTTGCGGTGGTATTTTGCTCCGTGTGGGTGGGCG
TAGACATGACGTGACATCATGACACCATAATCCACTGATGTTACCTCGAATGTTCCAACT
CGCACGGAATAAC

Homology of Contig U35_137 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g16860.1	651	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi4g04220.1	649
Arabidopsis v10	AT3G12580.1	650	\| Symbols: HSP70, ATHSP70 \| heat shock protein 70 \| chr3:3991487-3993689 REVERSE LENGTH=650