barSeed - Barley Seed Development Database

Probe CUST_26553_PI390587928

Source Contig U35_19974

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26553_PI390587928	Hv_44K_v2	CTGTACATAGTGATGCTCATGGCTGTTTGTTTCATTGTATGAGATGTAAAAGAAGAAGAA	1332	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.283	0.107	0.610	2.821	2.359	2.209
Raw	16.520	8.648	53.972	376.041	114.807	114.737

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68895.1	3189	2e-24	15 - 74	100	60 / 60	minus	ABC12088
MLOC	MLOC_68895.2	2012	2e-24	15 - 74	100	60 / 60	minus	ABC12088
JLOC1	JLOC1_45623.2	2066	8e-25	1850 - 1909	100	60 / 60	plus
JLOC1	JLOC1_45623.1	3163	8e-25	2947 - 3006	100	60 / 60	plus
Harvest21	ABC12088	1402	3e-25	1333 - 1392	100	60 / 60	plus	ABC12088
Harvest35	U35_19974	1402	3e-25	1333 - 1392	100	60 / 60	plus

Contig Sequence (1402 bp)

>U35_19974 1402 Hv_44K_v2
GGGCAAGCAGAGGAGGTCGTCGGAGGGGAGGAAGAGGCGGCAGCAGCAGCAGCAGGAGTA
CCGGCTGGTGAGCTACGAGGAGCTGCCGGAGTACATGAAGGAGAACGAGTTCATCCTCAA
CCACTACCGCTCCGAGTGGCCGCTGCTCCACGCCTTCCTCAGCGTCTTCTCCTGGCACAA
CGAGACCATCAACATCTGGACGCACCTCCTCGGGTTCTTCCTCTTCCTCGGCCTCACCCT
CTGGCACCTCGCCCAGTACTTCCCCCAGGTCGCCCACCTCATCGGCCACCTCTCATGGCC
GATCTCCAAGGTCGCAGAGAATGTCTCCAGCAACATCGGCGATGTCCTCTCCGGTGCGGC
GTCGTTCATGCAGGCGAGCCCGGGGCTGGCGATGGCGGCGGCGGCGGGGGTGGGGCCGAC
GACGCGGTGGCCCTTCTTCGTGTTCCTGGCGGGGGCCATGTTCTGCCTGATGAGCAGCTG
CGCCTGCCACCTGCTCTCCTGCCACTCGCACCGCCTCAACCTCTTCCTCATCCGCCTCGA
CTACACCGGCATCGCCGTCATGATCGTCGTCTCCTTCTTCCCGCCCATCTACTACATCTT
CCAGTGCGAGCCGCGCTGGCAGGTCGCCTACCTCTCCGCCATCTCGCTCGCCGGCGCCGC
CACCGTCTACGCGCTCATGTCCCCCCGCCTCAGCGACGCCAAGTACCGCGCCCACCGCGC
CCTGCTCTTCGTCGGGATGGGCCTATCCGGCGTCGTGCCGGCCGTGCACGCCGCCGCCGT
CAACTGGCACGAGCCGCGCCGGAACGTCACGCTGGCATACGAGGGCGCCATGGCCGCCTC
CTACCTCGTCGGCACCGCCTTCTACCTCACCCGCGTGCCCGAGCGGTGGAGGCCCGGGAT
GTTCGACCTCTGCGGGCAGAGCCACCAGATCTTCCACCTGCTTGTCATCGCCGGCGCGCT
CGCGCACTACGGCGCCGCCATCGTGTTCCTCCGGGTCCGCGACGAGATGGGCTGCCCGGC
CAACTGATACCGATGCGCATGCATGCCGTCGTTCACAGTACCATCAGATTCTTAGTAGTT
AATGGAGACCCTCTGCATCCATCCGGGGATGGACACAACCCGATTATTGCCATCGAAATG
GCATTTTACCGTGAATGCAGATGATACAACGGATCTGATCTGAGTCAGGAGGGGATTTAA
GAAAGGAAGGCGTTTTGCTTGCGAGATTGGTTAATTTGTTTGTAGCAGTTAGTTATTTGT
TGCAGTTTGCTGTGGTGAGTGGATTGATGATACATGGATGATATACATCAACTGTTAATT
ACAGCTCAGAACCTGTACATAGTGATGCTCATGGCTGTTTGTTTCATTGTATGAGATGTA
AAAGAAGAAGAAATTTGTGCAG

Homology of Contig U35_19974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43620.1	377	7e-170	protein\|haemolysin-III, putative, expressed
Brachypodium v1_2	Bradi1g30510.1	381	0.0
Arabidopsis v10	AT5G20270.1	332	5e-92	\| Symbols: HHP1 \| heptahelical transmembrane protein1 \| chr5:6841025-6842656 REVERSE LENGTH=332