barSeed - Barley Seed Development Database

Probe CUST_26551_PI390587928

Source Contig U35_19976

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26551_PI390587928	Hv_44K_v2	GTCGTGGCCAAGCTGCATGATCATTGATAGATCACAAAATTTTAATTCAATCTTGTTAGA	1244	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.595	1.782	0.725	1.265	0.581	0.500
Raw	97.103	66.272	25.994	72.048	12.027	11.161

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13529	1316	3e-25	1233 - 1292	100	60 / 60	plus	ABC13529
Harvest35	U35_19976	1328	3e-25	1245 - 1304	100	60 / 60	plus

Contig Sequence (1328 bp)

>U35_19976 1328 Hv_44K_v2
ACACCCCTGCCAGCTCCCGCTCGCGACGCCACCTCACCTGACCACCTCGGCTGCTAGACG
GGCACGCGGGCTCGCCGACTCCTTCCTTCTTTCATCAGGCTTTGATCTGTGGCTGGGAGC
TCACACTTTCCGATCTGAGTTCAGGCTTGACGGCTTGATCATGGAAGGATCCACTCCCAC
GATCACAAGGATTGCTGTGGTCACCGGCGGGAGCAAAGGGATCGGGCTGGAGGCGTGCAA
GCAGCTGGCCGGTAGAGGCATCACGGTCGTTCTGACGGCCAGGGACGAGACGAGGGGAAC
GGCGGCTGTGGAGCAGATCAAACGGCTGGGCCACTCGGATGTCATTTTCCATCAGTTAGA
CATCACGGATGCTTCCAGCATCGCTCGGCTGGCAGATTTCCTCAAGACCCGTTTCGGGAA
GCTTGACATCCTGGTGAATAATGCCGCTACCGATGGGATCGAGCATGTCATCAACCCGGT
TTATGGTTTGATTCCCGGCGATGAAACGTTCAATGGCATGGATGCGGGCCAGAGGATGGA
TTGGATGTGGACCACTTGTCGACAGACGTACGAAACTGCAAAGCAGGGCCTGCAGACGAA
CTACTACGGCACAAAGCGGGTGACGGAGGCGCTCCTGCCCCTGCTCCGATCCTCATCGGA
CGGAAGAATCGTCAATGTCTCCTCCAACTTCGGATTGCTCAGCTTTTTCAGGAACGAGGA
GCTGAAGAAGGAGCTGAACGACGTCGACAGCCTGACGGAGGAGAGGCTGGACGAGCTGCT
GGCCATGTTCCTGAAGGACTTCGAGGCCGGCGCGGTGGAGGCGCACGGGTGGCCGGCCGA
GTTCTCGGCGTACAAGGTGGCCAAGGCCGCCATGAACGCCTACTCGAGGATCCTGGCCAA
GAGGCATCCGGAGCTGCGCGTCAACTGCGCGCACCCCGGCTACGTGAAGACAGACATCAC
CAGGAACTCCGGGATCCTGACGCCGGAGGAGGGCGCTCGGAACATCACTGGCGTTGCGCT
GCTGCCGGAAGGCGGGCAGACCGGCAAGTACTTCTCCGAAGGCGAGGAGGCATCGTTCGT
GTGAAAAAATAAATCATCTGTAGCACTACTGTTTTGTTGCGCCAATCTGTGGTGGGATAA
TAATCTGTGAGTTGAAGAATAAAGCAGGTATGTTCGTTTGGACTACGCCTGTGCTCGAAG
ATCTCAGAACATCTACACCCGGACGTCTCAACCCCGTTTCATATGTCGTGGCCAAGCTGC
ATGATCATTGATAGATCACAAAATTTTAATTCAATCTTGTTAGAATAATCCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_19976 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44980.1	310	1e-154	protein\|short-chain dehydrogenase/reductase, putative, expressed
Brachypodium v1_2	Bradi5g16650.1	310	0.0
Arabidopsis v10	AT1G01800.1	295	6e-79	NAD(P)-binding Rossmann-fold superfamily protein \| chr1:293396-294888 FORWARD LENGTH=295