barSeed - Barley Seed Development Database

Probe CUST_26550_PI390587928

Source Contig U35_19977

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26550_PI390587928	Hv_44K_v2	GTATGTCTGTATGCGGTTTAGTTTAACTGCAGTCAAGTAGGTTGTGGGCTCCTATCCAAA	1424	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.753	1.566	1.158	0.756	0.391	0.583
Raw	110.862	156.848	101.018	109.575	18.723	30.847

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11854	1492	3e-25	1425 - 1484	100	60 / 60	plus	ABC11854
Harvest35	U35_19977	1492	3e-25	1425 - 1484	100	60 / 60	plus

Contig Sequence (1492 bp)

>U35_19977 1492 Hv_44K_v2
ATTCAACATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAGTTGTTCTTCCGAACTGG
TCAGATTGGTAACCTTGAGAATACCCGGAATCGTACACTACACGGTGTTTTAAGGGTTCA
AAGTTGTTTCCGAGGGCATCAAGCACGACGCCATGCAATGGAACGAATTAGAGGAGTTTT
GGCTCTTCAATCATTCATTCGTGCTGAGAATGCAAGACAAAGTTATTTATCTCTGTCGAA
GAAACATAGGGCGGCCATTCTTGTGCAGAAAAACCTTAGAGGCTGGCTTGCAAGAAGATA
TTTCATTAAGATACGGAAGGCTTCAGTAATTGTACAATCTGGTATCCGCGGCTGCCTTGT
TAGAAGATGCGCCGGCAATGTCGATCTACTGAACGTGTTAAGAGAATTCGAATCGAAAAA
GGAGGCAGAGGGTGACCAAATCTTGATCAAGGCGTCATTCCTGGCTGAGCTACAACGGCG
AATCCTTCGTGCCGAGGCCACGGTCCGAGAGAAGGACGAGGAGAACGAGATGCTACACCA
GCGGCTCCAGCAGTACGAGAACCGGTGGCTAGAGTACGAGCAGAAAATGAAGGCGATGGA
GGAGATGTGGCAGAAGCAGATGCGGTCGCTGCAGTCAAGCCTGTCGGTGGCGAAGAAAAG
CCTGGCCCTAGACGAGACGCCTCGGATGTCGGACTCGTCCGTGGAGCAGAGCTGGGAGAG
CAATGGGAACCACGTGGGCGGGGGCTCCCACTCCCAGCAGCTGGCGGCGGCGGCGCCGCG
GATCACTGGGCGCGAGATGAACGCCAGCATGAGCGTCATTGGACGGCTGGCGGAGGAGCT
GGAGCAGCGGAGCCAGGTGTTCGCCGACGACGCCAAGTTCCTGGTGGAGGTCAAGTCCGG
GCAGGCGGACGCGAGCCTGAACCCAGATGTGGAGCTGCGCCGGCTGAAGCAGAACTTTGA
CTCGTGGAAGAAGGACTTTGGCTCCCGCATCCGGGAGACCAAAGTTATCCTGAACAAGCT
CTCGAGCGGCGGCGGCAGTGCCGGTGGCAACGAGTCCTCCCCCAACTCGGCCAAGCGCAA
GTGGTGGGGCAGGCTCAACACCTCCAAGTTCTCGTGAGTTTGTCAATGGTGTATGATGGT
GATGATGATGGTGGTGTAGACGCGCCGGCATTTTACGCGCCGGCGCTAGTCCTAGAGAGT
TTGTGAGTTATGCTGCTGCGGTGTCCAGTGTTTTGTGCTGGATGAGTATGTGATTCGTGG
AGGGCGAGTTGTATAGTTCTTCCACTGGGGGGCTGCTTCTTTTCATGGCCGCCCATGAAC
CACTGAGTTGTGATGTAATGTAATTACTTGCTAAGATATACCACTACTGCTTAAAGGGAG
GAGATTGGGGTTTGCTCAGTGCCATTTTGTTTTCTCGTGTATGTGTATGTCTGTATGCGG
TTTAGTTTAACTGCAGTCAAGTAGGTTGTGGGCTCCTATCCAAAAAAAAAAA

Homology of Contig U35_19977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34710.1	996	0.0	protein\|myosin-2 heavy chain, non muscle, putative, expressed
Brachypodium v1_2	Bradi3g29440.1	1191	0.0
Arabidopsis v10	AT3G19960.2	1176	3e-114	\| Symbols: ATM1 \| myosin 1 \| chr3:6949787-6956736 FORWARD LENGTH=1176