- Probe CUST_26545_PI390587928
- Source Contig U35_143
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26545_PI390587928 | Hv_44K_v2 | TTATCTGAGACTTGGTTGTGGTGGTTATTGTTTTGTCTTGAGTGGTCGGGGTTATGCCGT | 420 | GeneList: brown4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.624 | 1.228 | 1.192 | 0.710 | 0.326 | 0.257 |
| Raw | 77844.633 | 86737.167 | 79589.033 | 72613.633 | 12060.060 | 10442.860 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250148.1 | 2398 | 2e-24 | 2124 - 2183 | 100 | 60 / 60 | plus | ABC00319 ABC00326 ABC00873 ABC00998 ABC48264 |
| MLOC | MLOC_53941.1 | 4154 | 2e-24 | 217 - 276 | 100 | 60 / 60 | minus | ABC00319 ABC00326 ABC00873 ABC00998 ABC39277 ABC48264 |
| MLOC | MLOC_53941.2 | 2344 | 2e-24 | 7 - 66 | 100 | 60 / 60 | minus | ABC00319 ABC00326 ABC00873 ABC00998 ABC39277 ABC48264 |
| JLOC1 | JLOC1_34691.1 | 2570 | 8e-25 | 2279 - 2338 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00999 | 805 | 3e-25 | 79 - 138 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00681 | 2288 | 3e-25 | 2141 - 2200 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC50748 | 135 | 5e-23 | 56 - 115 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_473 | 2304 | 3e-25 | 2130 - 2189 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_143 | 558 | 3e-25 | 421 - 480 | 100 | 60 / 60 | plus |
Contig Sequence (558 bp)
>U35_143 558 Hv_44K_v2 GAGGAAATCTGAGGACGAGGAGCACAAGAAGAAGGTTGAGTCCAAGAACGCCCTGGAGAA CTACTCTTACAACATGCGCAACACAATCAAGGATGAGAAGATCGCCTCCAAGCTGCCGGC GGACGACAAGAAGAAGATTGAGGAGGCCATCGACGCTGCCATTCAGTGGCTGGACGCGAA CCAGCTTGCTGAGGCGGACGAGTTTGAGGACAGGATGAAGGAGCTGGAGGCCCTGTGCAA CCCCATCATTGCTAAGATGTACCAGGGTGCTGGTGCCGACATGGAGGGCGGCATGGACGA CGACACCCCGGCTGCTTCTGGCGGCGCTGGCCCCAAGATTGAGGAGGTTGACTAAACAAG TCGATTCTGTTGCAGAGGCAGGCAAAGCCTGCTGCTTAGTTATTATGTCGTGTCCTATCG TTATCTGAGACTTGGTTGTGGTGGTTATTGTTTTGTCTTGAGTGGTCGGGGTTATGCCGT GCGAGTAAACGTTCGTGGAACATCAGTGTTGTCACGTCTAAGTAATATATTATTCTAAAT CAAAAAAAAAAAAAAAAA
Homology of Contig U35_143 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g47760.4 | 545 | 2e-51 | protein|DnaK family protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g04220.1 | 649 | 1e-56 | |
| Arabidopsis v10 | None |