barSeed - Barley Seed Development Database

Probe CUST_26538_PI390587928

Source Contig U35_19980

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26538_PI390587928	Hv_44K_v2	CCAAATAATCAACATTAAACCTTGCATCTTTGCTTGGAAGGTTTTTCTTCCCGATAATCT	1142	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.497	1.771	1.028	0.865	0.444	0.344
Raw	2829.750	5179.483	2670.777	3510.870	623.802	533.371

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354121	1467	2e-24	1325 - 1384	100	60 / 60	plus	ABC14571
MLOC	MLOC_59798.1	675	2e-24	475 - 534	100	60 / 60	plus	ABC14571
MLOC	MLOC_59801.1	1127	2e-24	973 - 1032	100	60 / 60	plus	ABC14571
JLOC1	JLOC1_38939.1	602	8e-25	451 - 510	100	60 / 60	plus
Harvest35	U35_19980	1350	3e-25	1143 - 1202	100	60 / 60	plus

Contig Sequence (1350 bp)

>U35_19980 1350 Hv_44K_v2
CGCCACCTCCACCGCGCCGCAGCGCGCCGCGAACTCGACCCCGACCCCGACGCCGCTCTT
TACCGGCCGCCCGCTCAACCCTAACCCTAGCCACGCCTCCCCCGCGCACGGCATCCTCTA
CCCCGTCGCCACATCATCCTCCATCCCCGCCACCGCCGCGGCCGTGGCGGCGAACCATCG
CCGCGCCCCCCACGTCGGCGTCGTGTACCCGCGCCCCCACGCCGTTGCTGTCCCCACCGC
CCCGCCGTCCCAGCGTCCCCAGGCGACAACGCAGCAGCGGTCCTACGCCGCCGCGCCGCG
GGCCGTGGTGGCGGGCGTGACGCCGCGTCCCGAACACCCTCCCCGAGGGGTTCCAATAGC
CCCGCATCCTCAGCTCAAGGTTAACGCTGTTCGAGCTGTTACTCCATCTCTGGCTGTTAC
TCCATCTCTAGTTGTTACCCCATCTCCAGCTGTTACCCCATCTCCAGCTTTTACTCCATT
TCCTCAGGAGCATGTCAACACAAAGGAAAGAGAAAGTACCAAAGAAAACGCTACAACTGT
GGTGATCAATGACCGCAAAGTTAACGTGTTAGACAGCGAGTCAGGATCTTTGTATGCTCT
TTGTCGATCTTGGCTACGCAATGGCGTTCCACATGAAATTCAGCCAAGCTTTGTTGGAAA
TGTTGCACCACTTCTTCCAAGACCTTTGCCTGCTTCAGTTGTAGATTCAAGGATGTCAGA
GAAGGACAATGATGTTGAAGATCAAGTTTCAGAAGAAGAGCAGAGATATGCCCAAGAAAG
GAACACCCTGTGCATCAGAGAAGTGATGGACAGAGCATTGACCAATAATGATACTATTAC
AACTGCGTCTGACTTGTTGAGCGAGCATGTAACTCGTGCAAAAAAGATACGTGCCCAATT
GCGCAAGGAGCGGCAAGTCCGGATCGAGAGATACAAGCAGCGTCTTGCACTTCTTTTGCC
CCCACCACCACCCCCACCTAGCGAGCCATGATGGATCTATATACAAACCAACCGATGAGA
TTGGAAGTACCATGGCTTCCATGTTGCCTTTATGTTGTCACATGTTAAGTTACAGAATCT
GTAGAAGCGGAGACAATTCCAGATGTTGCACTGTTACTCTGTTTTAGAATTTGTTCCAGC
TGCCAAATAATCAACATTAAACCTTGCATCTTTGCTTGGAAGGTTTTTCTTCCCGATAAT
CTAACATTTTTTTTGGAACATTTGCTCCATGTAAATATGTGTTGAGAATCTTTCTAGACC
AACAATTGAACTATTTCTAGCATGGTATAATTTCTGCTCTTTATGTAGTTATTACAGTTG
TCATCTGTCAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13190.1	322	2e-95	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g50960.1	320	1e-107
Arabidopsis v10	None