barSeed - Barley Seed Development Database

Probe CUST_26537_PI390587928

Source Contig U35_19981

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26537_PI390587928	Hv_44K_v2	TCCAGCACCCCCTAGTACTATCCATGGTTCTTAATCCTAACATGAATTTTACCCAAAAAA	1401	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.352	6.160	1.362	0.899	0.561	0.652
Raw	152.404	139.664	25.512	26.383	4.695	6.996

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11927	1472	3e-25	1402 - 1461	100	60 / 60	plus	ABC11927
Harvest35	U35_19981	1472	3e-25	1402 - 1461	100	60 / 60	plus

Contig Sequence (1472 bp)

>U35_19981 1472 Hv_44K_v2
TTCCTTCCTACCCTGCTTTCTCTTAGGCCTCCGTCTTCCCCTCTCCGCCATCTTCCTTCC
CCATCTCGGCTGCCTAGGACAGCCGGCCGGGCTGCCGGGACGAGCTTCACCATGGAAGAA
AATCACTGGGAAACCTTCAGGGGGATTGATTTTGGTGTAGCCGGAGAGTTTAAAGTAAAG
GTGGAGGACGAGGAAGCGAGGAATCGTACTGATTCTACCACTTTTGGTCTGCACCAATGT
GTTTATACCGTTGGTCCAGTCGAATCCCAGAAGATGGTCAAAAAGGGTAGCTTGGGTAAT
CAAATATCAAAAGAGCAATTTATTTTCCTTGCTAGCTTGAACAAGCACCCAAATGCATTT
TTTGTTGAGAACTACTACATGGATGGGGATGGCATTGGATGTCTTGTAGTGGAGTCTCTC
AACGGCAGATTCCAAAGCTGGCTTAACTATCAGGTTGACACGAAGAATAAGCAGCCTAGT
GCTCCTACGCTGTTTACTGCTGATGGGAGAATGCTGCCGACGTTGCGGACCATCATTTTA
TCTCTCTGTAGCTTTGTAGAGCATGTACTGGAGAAGAGATGGTATCCTCGGCACCTCACC
ATGGATGATCTGTACCTCAAGATGATGAATAATCAACCTACATTGAAAGTTTTGATGTCT
GATGTGATACAAGGTACTACTCCAACAAGAATTGCCTCGGTGTGGAACCATGTTAAGGAA
ATCATCACCCACTGTTGCACACTTGACAATGCCACACTGAGTGGTGACAGTAGTAGCTTT
TATGACTTCATTGGTCGTCAATCAAAACGCGTACCATTAGAAACATATACCGATGCTTGG
AGTTATGCTGACAAGTCTGCTTACCTACTGCTCATAATGCAAGAAGAAATGGTGATGATG
AAACGATATGTTGAAGCGTCAGGCATTGTTTGGCCAACTGAAGATGGACTCATACAACCA
ATGTTGCAACTCATCCTCGATCACGATAAGACATCAACATATGATACAGATGTACCATGG
GATTACATCCGACTCTGCCGAAATGTCAATAAGAAATTTGACGTACCTAAATCTGTGAAG
GCAGTGATTAAAGATCACATTGGTTTCCTGAAGAAAATGGAGGAGTGGACACCAATGATC
TGGGCAAACTTGTATGAAACTATCGGACCTCTTTCATTGAGGCGATGAAACCTGGTGACT
ACCAAAGTCTGTTGTATCTGGAAGCTCGTTTCGTGGAGTACTTCGGCTTGAAAGAACCGG
CTGAACTTCAAGAGAGAAATAAATGAGGGATTGTTTTGTTATGTATTGTACTGTACTAGC
AGTCGTCAGCCGAAGACATGAATTCCGGCACCCTGCTACTACTTGTTATGGTTGTTATTG
TACTTATCTTCTCTGAGGACATCCAGCACCCCCTAGTACTATCCATGGTTCTTAATCCTA
ACATGAATTTTACCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19981 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None