barSeed - Barley Seed Development Database

Probe CUST_26534_PI390587928

Source Contig U35_19984

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26534_PI390587928	Hv_44K_v2	GTGTACATTGTTTACGTCAGACTGGAATGTACATACTGTAATTGTGTTGTGCTTCAAAAA	1166	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.364	0.864	1.048	1.526	0.982	1.131
Raw	47.848	179.014	189.434	414.901	96.527	122.181

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65343.2	2744	3e-21	2 - 58	98	56 / 57	minus	ABC12257 ABC15266
MLOC	MLOC_65343.1	2922	3e-21	21 - 77	98	56 / 57	minus	ABC12257 ABC15266
JLOC1	JLOC1_42994.5	2959	2e-21	2825 - 2881	98	56 / 57	plus
JLOC1	JLOC1_42994.4	2964	2e-21	2830 - 2886	98	56 / 57	plus
JLOC1	JLOC1_42994.3	3302	2e-21	3168 - 3224	98	56 / 57	plus
JLOC1	JLOC1_42994.2	3307	2e-21	3173 - 3229	98	56 / 57	plus
JLOC1	JLOC1_42994.1	3027	2e-21	2893 - 2949	98	56 / 57	plus
Harvest21	ABC12257	1238	3e-25	13 - 72	100	60 / 60	minus	ABC12257
Harvest35	U35_19984	1238	3e-25	1167 - 1226	100	60 / 60	plus

Contig Sequence (1238 bp)

>U35_19984 1238 Hv_44K_v2
TTCTAGTAGGACTAGACGATGAACTCAGAAAGCGTGTCATAGGTCAAGATGATGCTGTTG
TGGCTATATCAAGAGCTGTGAAGAGATCACGCGTTGGCATGAGTGATCCCGACAGACCTA
TTGCTACTCTACTTTTCTGTGGTCCAACAGGAGTTGGAAAGACTGAATTAACCAAAGCTC
TAGCATCAACTTACTTTGGATCTGAGTCAGCTATGGTTAGATTAGATATGAGTGAGTACA
TGGAGCGGCATGCTGTGAGCAAGCTTATAGGCTCTCCTCCAGGGTACATGGGATTTGGTG
AAGGTGGTACTTTGACAGAAGCAGTCAGGAGAAAACCATTCACTGTGGTATTGTTTGATG
AAATAGAGAAAGCTCATCCTGATATTTTCAATATTCTTCTCCAAGTGTTTGAAGATGGTC
ATTTGACGGACTCACAGGGCCGCAGGGTTTCCTTCAAGAATACATTAATTGTCATGACAT
CAAATGTTGGTTCTACATCGATTTCCAAAGGAACGATGAGCATGGGTTTCCAGACGCAAA
GTGATACAGAAGAGAACACATACGCTGTAATGAAATCCTTGGTAATGGAAGAGTTGAAGG
CATTTTTTCGACCTGAATTGCTCAATAGAATGGATGAGGTGGTTGTGTTCCGTCCACTTG
AGAAGACTCAGATGCTGGCTATTCTTAATATAATTATGGAAGAGGTGAAGGGTAGGCTTT
TGGCCCTCGGTATCGGCTTAGTAGTATCTGATGCCATGAAGAACATGATTTCTCAGCAAG
GATACGACAAGAGCTATGGTGCACGGCCACTTAGAAGGGCCGTCACTCAATTGGTTGAGG
ATGTCATCAGCGAAGCAATTCTCTCTGGGCAGTACAAACCTGGTGATACCATAATGATGG
ACACTGATGACAAGGGAAAACCTTGCTTGAGCCGGTTGAATGATCAGACTGTTCAAGTTT
CTGATCCAACACCAACGCTTTGAAGGCTTGAGCACCAGTGTATAGTGAGGCTTACTGCGC
TGTGGATAAGCTTGTTGATTCTTTCGTGCATAGCGGTATAGGTTCCGTAGTTCATGTACA
TATTCTCCAGATGCTGGAGTTTCTCCGTGAATATAATGTAAATTGAAGTCTTACATCACC
TGTACATACTGCTGCATTTCTAACATGTGTACATTGTTTACGTCAGACTGGAATGTACAT
ACTGTAATTGTGTTGTGCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19984 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32520.2	683	0.0	protein\|ERD1 protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g08920.1	943	0.0
Arabidopsis v10	AT5G51070.1	945	6e-150	\| Symbols: ERD1, CLPD, SAG15 \| Clp ATPase \| chr5:20764479-20768481 FORWARD LENGTH=945