barSeed - Barley Seed Development Database

Probe CUST_26532_PI390587928

Source Contig U35_19986

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26532_PI390587928	Hv_44K_v2	GAGGTATAGCATGATGTTTTTTGTCGTGCCGTCTTTCCTGGCAACACGGCTTTCAAAAAA	1080	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373034	1667	9e-22	1527 - 1581	100	55 / 55	plus	ABC13589
JLOC1	JLOC1_43440.1	789	5e-22	634 - 688	100	55 / 55	plus
Harvest21	ABC13589	1151	3e-25	1081 - 1140	100	60 / 60	plus	ABC13589
Harvest35	U35_19986	1151	3e-25	1081 - 1140	100	60 / 60	plus

Contig Sequence (1151 bp)

>U35_19986 1151 Hv_44K_v2
CCTAGGAGCAGCTTCAGGGTCGCAGCCATTGTAGAGGTTCCTCCGTTAACGCTCATACCT
AATTGGCTCGTACAGCAAAGGCTACTGTACCCCTTCCGAAAACAGGTGGGTGGGTCCATT
TTATCAGCTAAACTTGCACTTGAGAGAGGATGGGCCATTAATGTTGGTGGAGGGTTTCAC
CATTGTTCGGCGGAGGAAGGGGGTGGATTTTGCGCGTACGCTGATATTTCGCTCTGCATT
CAGTTTGCGTTCGTTCGTCTGAATATTTCAAGAGTAATGATCATAGATCTGGATGCTCAC
CAAGGAAATGGTTATGAGAAGGATTTTGCTAATGATGGAAGGGTTTACATTTTGGACATG
TACAATGCTGGAATTTATCCCTTTGATTATGCTGCTAAGCGATATATTGATCAGAAAATC
GAGTTAGTTAGTGGGACAGAAACAGATGATTACTTGGATCAGCTTGACAAGGCTCTGAAG
GTCGCCCAAACTAGATTCCAGCCCCAGCTTATTATTTATAATGCTGGGACAGACATCCTG
GATGGTGATCCATTGGGTAACTTGAAGATAAGCCCTGAAGGTGTGGTGATTAGAGATGAG
AAGGTGTTCAAATTTGCAAAAGATCAGAACATTCCACTTGTCATGATGACATCAGGAGGC
TACATGAAGTCGAGCGCACGTGTAATCGCGGATTCGATTACCAATCTCTCACAGAAAGAC
TTGATACAGCTAGGTAGCCAGCCAGGCTAAAGGAGCCTCTGCCACCCACAAGTGTTCAAC
CTGAAGGGCACATCCACTGGATGTATAGTTTACAGTTCTATCATATTAGTATGAATGAAT
CACGGAAAATTCTTGTCACCTTGTACATACTGTCATAAGGCCTTTGTTTCCAAGAAGAGC
ACGCAATAGGGAAGCTGAGAGCGCCGTGATGACAAGAGAGACAGCACCTGGAGATCCCCA
TGGATCCCCATCGTCAAACTATACTATAGAGGTTTCAGTTACTGTTTTCTCCTGGGAAGC
CAATAAACACAGAACTGCTTAAAGAGTTTGCCCTGTATACATCTTGAAGGTTACCAAGAA
GAGGTATAGCATGATGTTTTTTGTCGTGCCGTCTTTCCTGGCAACACGGCTTTCAAAAAA
AAAAAAAAAAA

Homology of Contig U35_19986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g37420.1	353	4e-156	protein\|histone deacetylase, putative, expressed
Brachypodium v1_2	Bradi1g37510.1	353	1e-156
Arabidopsis v10	AT5G26040.2	387	4e-128	\| Symbols: HDA2 \| histone deacetylase 2 \| chr5:9099321-9101598 REVERSE LENGTH=387