- Probe CUST_26529_PI390587928
- Source Contig U35_19988
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26529_PI390587928 | Hv_44K_v2 | CATGTAATCTCAGTGCTGTCATATGATTGATCTTTTGTACTGTTCCAATCTACTTTTACC | 629 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.655 | 2.632 | 1.602 | 0.790 | 0.274 | 0.244 |
| Raw | 42.822 | 109.633 | 55.925 | 43.826 | 3.567 | 3.989 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372134 | 1473 | 2e-24 | 1270 - 1329 | 100 | 60 / 60 | plus | ABC02487 |
| MLOC | MLOC_44309.3 | 3540 | 2e-24 | 3344 - 3403 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44308.2 | 1101 | 2e-24 | 927 - 986 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44308.1 | 1105 | 2e-24 | 904 - 963 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44309.4 | 3544 | 2e-24 | 3348 - 3407 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_28706.5 | 3388 | 8e-25 | 3137 - 3196 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28707.1 | 6174 | 8e-25 | 93 - 152 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_28706.4 | 948 | 8e-25 | 697 - 756 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28706.3 | 966 | 8e-25 | 715 - 774 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28706.2 | 4786 | 8e-25 | 4535 - 4594 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28706.1 | 3554 | 8e-25 | 3303 - 3362 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19988 | 735 | 3e-25 | 630 - 689 | 100 | 60 / 60 | plus |
Contig Sequence (735 bp)
>U35_19988 735 Hv_44K_v2 CAACCACTCTCGACTCTGTCTCAATTCATTTGCCTAGCTAGCTAATGGGGATGGCACTTC CACGGTCGTCCCTGTCTCTGCGCTCCCTGCTGCTGCTCATGTCGCAGAGGAAGCCACATC GGAGCTCTTTCTTCTCCTCCTCGGCAGGCCCCGGCCCCGCCGCCGTTCTGCCTGCGGCTC CAGGAACTGGCACTCCGGTTGCTCCTGCCGTCCAGCCTCCAGCCGCTCCAGCCGAGGAGC CATCAGCACATACCCTGGAAGATCCTAAACATCCAGTTCTCGGTGGTTCATGTAGCACGC CTCAACCTGTGACCTGCGAGCCATCGCCGAAAACACATCCTGATGACAAAGTTTGCAAAG ATTCTGATCTTCCAGTTCCTGGTGGTGCGCGTAACTCTTCCCGCGATGAGCCGCCACGAT CATCTGGTGGAACTAGCGATATAGGCGCTAGAAACCCCGTCGAGCCCTGAGAGTTCGCCT ACGGACCTTAAATCGTGTACTCCTTCATCAGGCATCTACCGTACGAACTGCACAAGTCCT CCGTTTCCGGAAGAATACTGAATTGCCAACTGTTCGGGCGCTACGAGCAAATGCTAGCTG TGATTACTGCCGTGTTACGTCCGTGTGGACATGTAATCTCAGTGCTGTCATATGATTGAT CTTTTGTACTGTTCCAATCTACTTTTACCAAATAAAGGTGTGTGCTAGATTTTCGTTTTA AAAAATAGGAAAAAA
Homology of Contig U35_19988 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |