- Probe CUST_26528_PI390587928
- Source Contig U35_151
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26528_PI390587928 | Hv_44K_v2 | TTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTC | 0 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.625 | 2.653 | 1.072 | 0.742 | 0.599 | 0.706 |
| Raw | 346.460 | 361.387 | 141.466 | 158.074 | 40.800 | 56.378 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_6243.1 | 100 | 8e-25 | 20 - 79 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53060 | 250 | 3e-25 | 168 - 227 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC53056 | 419 | 3e-25 | 172 - 231 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC53051 | 452 | 3e-25 | 172 - 231 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC53050 | 274 | 3e-25 | 149 - 208 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC53049 | 355 | 3e-25 | 164 - 223 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC53036 | 566 | 3e-25 | 180 - 239 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC53031 | 236 | 3e-25 | 173 - 232 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC41528 | 148 | 3e-25 | 59 - 118 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC27063 | 681 | 3e-25 | 185 - 244 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC02154 | 496 | 3e-25 | 188 - 247 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC53065 | 242 | 1e-23 | 156 - 215 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC53059 | 244 | 1e-23 | 160 - 219 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC41549 | 195 | 1e-23 | 107 - 166 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC41454 | 269 | 1e-23 | 162 - 221 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC41479 | 178 | 6e-22 | 106 - 165 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_31699 | 448 | 3e-25 | 204 - 263 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_28281 | 681 | 3e-25 | 185 - 244 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_451 | 1864 | 3e-25 | 118 - 177 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_419 | 2235 | 3e-25 | 406 - 465 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_151 | 562 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_31639 | 338 | 2e-22 | 1 - 55 | 100 | 55 / 55 | minus |
Contig Sequence (562 bp)
>U35_151 562 Hv_44K_v2 GAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAA AACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGTGCCG CACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTATGCTCTGACCCGAG TAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATA CTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTG GGTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT CTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAG GGAACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATTGTCACTGCT TATGGACCCGAACCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGAT TCTTCAACATCAGTCGGTCCTC
Homology of Contig U35_151 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |