barSeed - Barley Seed Development Database

Probe CUST_26526_PI390587928

Source Contig U35_153

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26526_PI390587928	Hv_44K_v2	GTGGAGCAATGCATGCTTGTTGGATGTGTACTTGTACTCTGGTGTAACCGATGTAAAAAA	947	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.172	5.151	1.412	0.717	0.238	0.327
Raw	3701.253	5173.663	1146.640	965.093	103.903	162.476

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60073.1	740	3e-22	1 - 56	100	56 / 56	minus	ABC01519 ABC01529
MLOC	MLOC_60073.2	1165	3e-22	1 - 56	100	56 / 56	minus	ABC01519 ABC01529
JLOC1	JLOC1_39142.1	1337	8e-25	1107 - 1166	100	60 / 60	plus
Harvest21	ABC35104	423	3e-25	32 - 91	100	60 / 60	minus
Harvest21	ABC01529	1038	3e-25	937 - 996	100	60 / 60	plus	ABC01529
Harvest21	ABC01519	245	3e-25	146 - 205	100	60 / 60	plus	ABC01519
Harvest35	U35_39050	423	3e-25	32 - 91	100	60 / 60	minus
Harvest35	U35_153	1051	3e-25	948 - 1007	100	60 / 60	plus
Harvest35	U35_61	245	3e-25	146 - 205	100	60 / 60	plus

Contig Sequence (1051 bp)

>U35_153 1051 Hv_44K_v2
CACGCACGCACGCGCGCGCCTCCCCCCGCTACAGGCACAGCCGGCCAGCGAGCGCGCGCA
CTGGTGCAGCAACGATGGCGCTGGTCTCCTCCTCCTCCGCCACCGCCGTCGCGGCGCTCC
CCAGCAACGGGCTGGCCGGCGCCCGGACCTCCTTCCTCGGCGCTGCCGGCAAGGCGGCCG
CGTCGCGCACGTCGTTCGCCGTGCGCGCCGCGGCGCCCGAGAGGCCCATCTGGTTCCCCG
GGAGCACCCCTCCCCCGTGGCTTGACGGCAGCCTTCCCGGAGACTTCGGCTTTGACCCAT
GGGGTCTTGGATCCGACCCGGAGAGCTTGCGGTGGAACGTGCAGGCGGAGCTGGTGCACT
GCCGGTGGGCGATGCTGGGCGCGGCGGGCATCTTCATCCCAGAGCTGCTGACCAAGATCG
GCATCCTCAACACGCCGTCGTGGTACACCGCCGGGGAGCAGGAGTACTTCACCGACACCA
CCACCCTCTTCATCGTGGAGCTCATCCTCATCGGCTGGGCCGAGGGCCGCCGGTGGGCAG
ACATCATCAAGCCAGGCTGCGTCAACACCGACCCCATCTTCCCCAACAACAAGCTCACCG
GCACCGACGTCGGGTACCCCGGTGGTCTGTGGTTTGACCCGCTCGGCTACGGCACCGGCT
CGCCCGAGAAGCTCAAGGAGCTGCGCACCAAGGAGATCAAGAACGGCCGCCTGGCCATGC
TCGCCGTCATGGGCGCGTGGTTCCAGGCCGAGTACACCGGCACCGGCCCCATCGACAACC
TCTTCGCTCACCTCGCCGACCCCGGCCATGCCACCATCTTCCGGGCCTTCGCCCCCAAGT
AAGGAACACGTTGGGAGTTAGCAACAAATCCGAGGAGTGTGCTACCACGGGGAAGAAGAT
CGCTGGTGGAATTAGATTATTTTTCCCGTGGATGATGGTATGTAATTGTGGAGCAATGCA
TGCTTGTTGGATGTGTACTTGTACTCTGGTGTAACCGATGTAAAAAAAAATGAATACCCT
TTTGAAGCTTAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38960.1	264	7e-162	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g23610.2	259	1e-174
Arabidopsis v10	AT3G61470.1	257	1e-146	\| Symbols: LHCA2 \| photosystem I light harvesting complex gene 2 \| chr3:22745736-22747032 FORWARD LENGTH=257