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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_26510_PI390587928Hv_44K_v2ACGGTCTCTAATGTTGTTGTATTATCCATTGCAAATTCGAGGTGAAACCGGACTCGTTTG519GeneList: greenyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 8.3645.6951.3860.6630.2110.247
Raw 3885.9304367.890880.851710.43873.00096.958



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35601528352e-24181 - 24010060 / 60plus ABC05026 ABC05028 ABC18723
MLOCAK3607416592e-24522 - 58110060 / 60plus ABC05026 ABC05028
MLOCMLOC_80208.15052e-24330 - 38910060 / 60plus ABC05026 ABC05028
JLOC1JLOC1_53414.15558e-25312 - 37110060 / 60plus
Harvest21ABC050283153e-2522 - 8110060 / 60minusABC05028
Harvest21ABC050274113e-2528 - 8710060 / 60minus
Harvest21ABC050266663e-25517 - 57610060 / 60plusABC05026
Harvest35U35_330127573e-25389 - 44810060 / 60minus
Harvest35U35_160036553e-25520 - 57910060 / 60plus



Contig Sequence (655 bp)

>U35_16003 655 Hv_44K_v2
GCATCATCATCATCATCATCAAGCACGCCCAGCGCAGAGTGATCGTCCAGAGAACTCCGC
AGCTCCGTCCCGATCGATGGCGTCGCTCACCATGATGGCGTCCCTCTCCGCGGCCGTGGC
GGTCGACCGGCGCGCGGCCGCCCCGCGCCGCGGCCTCGTGGTGGCCCGGGCCGCCAAGGT
CGAGCGCCAGCAGGAGCCGGCGGCCAAGCTGGCGGCCGTGGAGCCCGCCACCGACGGCCG
CCGCGCCGTGGTGTTCGCCGCCGCCGCCGCGGCCGTCTCGGCCATCGGCACGGCGGCGTT
CGCCGAGTCGGACGTCAAGAAGGGCACCCCCGAGGCCAAGAAGAAGTACGCCCCCGTCTG
CATCACCATGCCCACCGCCAAGATCTGCCACAACTGATCGTACGTGGGGTTGATGCTTGC
CACCGGCGGTAAATATTGTACTACGTACGGTTTTATCTCTTGTCCAAGTTCGAGCTTAGA
TGCATCAGGCCGCGCGCGTGCGCTTGGACGCCGCCATGGACGGTCTCTAATGTTGTTGTA
TTATCCATTGCAAATTCGAGGTGAAACCGGACTCGTTTGATTAAAAAAAAAAAAAAAAAA
TTCGTCTTTCATGCATGCGCCCTTTCGTCTGTCCACGTATTTTCTTCACGTAAAA



Homology of Contig U35_16003 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None