barSeed - Barley Seed Development Database

Probe CUST_26503_PI390587928

Source Contig U35_18948

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26503_PI390587928	Hv_44K_v2	TGCTCAACTTCGGCATCTTCGGCATGCCAATGGTCGGTGCTGATATCTGCGGGTTCTACC	236	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.562	2.105	1.655	0.367	0.570	0.530
Raw	41.950	38.715	27.868	8.352	3.521	4.250

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC16440	682	3e-25	237 - 296	100	60 / 60	plus
Harvest35	U35_18948	793	3e-25	237 - 296	100	60 / 60	plus

Contig Sequence (793 bp)

>U35_18948 793 Hv_44K_v2
CTTCATCACCATCGCCACCAGCGCCGTGCACTACAATGGCATCCTGGAGTACAATGCCCA
CAGCTTGTATGGCTTCTCCCAGGCCATCGCCACTCACAAGGGGCTGCAGAGCATCCAGGG
GAAGAGGCCGTTCATCCTGACGCGATCCACGTTCGTCGGCTCCGGTGCCTACGCCGCGCA
CTGGACCGGCGACAACAAGGGCACCTGGGAGGACCTCCGGTACTCCATCTCCACCATGCT
CAACTTCGGCATCTTCGGCATGCCAATGGTCGGTGCTGATATCTGCGGGTTCTACCCGGC
GAAACCGCCGCCGCTGGAGGAGCTGTGCAGCCGGTGGATAGAGCTCGGCGCATTCTACCC
GTTCTCAAGGGACCACGCCAACTTCGCCTCGGCGAGGCAGGAGCTGTACCAGTGGGAGTC
CGTGGCGAGGTCGGCGCGGAACGCGCTCGGCATGCGGTACAGGATGCTCCCGTACCTGTA
CACGCTCAACTACCAGGCGCACCTCACCGGCGCTCCCGTGGCGCGGCCGCTCTTCTTCTC
GTTCCCGGACTTCGCGCCGTGCTACGGCGTGAGCAACCAGTTCCTACTCGGCGCCGGCGT
CATGGTGTCCCCGGTCCTCGAGCAGGGCGCCAGCTCCGTGGACGCGGTGTTCCCGCCGGG
CACGTGGTACAACCTGTTCGACACAAGCAAGGCGGTGGTGTCCACGGGCTCCGGCGCCGC
CGTCAGGCTCCCGGCGCCGCTGAACGAGGTGAACGTGCACGTGCACCAGGGCACGGTCCT
GCCGCTGCAGCGC

Homology of Contig U35_18948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03950.1	933	2e-158	protein\|glycosyl hydrolase, family 31, putative, expressed
Brachypodium v1_2	Bradi2g02070.1	940	5e-161
Arabidopsis v10	AT1G68560.1	915	7e-138	\| Symbols: ATXYL1, XYL1, TRG1 \| alpha-xylosidase 1 \| chr1:25734435-25737897 REVERSE LENGTH=915