barSeed - Barley Seed Development Database

Probe CUST_26502_PI390587928

Source Contig U35_18949

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26502_PI390587928	Hv_44K_v2	ATCCTGGAGTACAATGCCCACAGCTTGTATGGCTTCTCCCAGGCCATCGCCACTCACAAG	526	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372013	3249	2e-24	1807 - 1866	100	60 / 60	plus	ABC12999
MLOC	MLOC_2050.1	2428	2e-24	1463 - 1522	100	60 / 60	minus	ABC12999
MLOC	MLOC_2050.3	2172	2e-24	1210 - 1269	100	60 / 60	minus	ABC12999
MLOC	MLOC_2050.2	2224	2e-24	1259 - 1318	100	60 / 60	minus	ABC12999
JLOC1	JLOC1_1236.1	2084	8e-25	816 - 875	100	60 / 60	plus
JLOC1	JLOC1_1237.1	2428	8e-25	1464 - 1523	100	60 / 60	minus
Harvest21	ABC16440	682	3e-25	41 - 100	100	60 / 60	plus
Harvest21	ABC16439	745	3e-25	421 - 480	100	60 / 60	plus
Harvest35	U35_18949	1011	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_18948	793	3e-25	41 - 100	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_18949 1011 Hv_44K_v2
CACGCTCAGCCCGGTGAACTACCCGCGCCCCAAGCTGCTGGCGTTCCTCGACAAGATCCA
CAAGCGCGGGATGAAGTACATTGTCCTCATCGATCCCGGCATCAACGTGAATGACACCTA
TGGCGTGTACCAGCGCGGCATGCAGCGCGACATCTTCATCAAGCTTGACGGGCAGCCATA
CCTTGCCCAGGTGTGGCCTGGCCCTGTCTACTTCCCGGACTTCATCAACCCGAACGGCGC
GTCGTGGTGGATCGACGAGGTGCGGCGGTTCCACGAGCTCGTCCCGGTGGACGGGCTCTG
GATCGACATGAACGAGGCCTCCAACTTCTGCACCGGCAAGTGCACCATCCCGACGACGCA
CAGGTGCCCGGACCCGACCTCCAAGGAGCCGTGGCTGTGCTGCCTGGACTGCAAGAACAT
CACCAACACCAGGTGGGACGAACCGCCGTACAAGATCAACGCCTCCGGGAAGACAGCCCG
TCTCGGCTTCAACACCATCGCCACCAGCGCCGTGCACTACAATGGCATCCTGGAGTACAA
TGCCCACAGCTTGTATGGCTTCTCCCAGGCCATCGCCACTCACAAGGGGCTGCAAAGCAT
CCAGGGGAAGAGGCCGTTCATCCTGACGCGATCCACGTTCGTCGGCTCCGGCGCCTACGC
CGCGCACTGGACCGGCGACAACAAGGGCACCTGGGAGGACCTCCGGTACTCCATCTCCAC
CATGCTCAACTTCGGCATCTTCGGCATGCCGATGGTCGGCGCCGACATCTGCGGGTTCTA
CCCGGCCAAGCCACCGCCGCTGGAGGAGCTGTGCAGTCGGTGGATCGAGCTCGGTGCATT
CTACCCGTTCTCAAGGGACCACGCCAACTTCGCCTCGGCGAGGCAGGAGCTGTACCAGTG
GGAGTCCGTGGCGAGGTCGGCGCGGAACGCGCTCGGCATGCGGTACAGGATGCTCCCGTA
CCTGTACACGCTCACTACCAGGCGCACCTCACCGGCGCTCCCGTGGCGCGG

Homology of Contig U35_18949 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03950.1	933	0.0	protein\|glycosyl hydrolase, family 31, putative, expressed
Brachypodium v1_2	Bradi2g02070.1	940	0.0
Arabidopsis v10	AT1G68560.1	915	8e-172	\| Symbols: ATXYL1, XYL1, TRG1 \| alpha-xylosidase 1 \| chr1:25734435-25737897 REVERSE LENGTH=915