barSeed - Barley Seed Development Database

Probe CUST_264_PI390587928

Source Contig U35_32042

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_264_PI390587928	Hv_44K_v2	TGATGCGCAGCGCCATCGACGCTTTCCCCGCCGTCCATTTCGCCCGCTTCGGCCGCCCCG	340	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18346.2	1966	2e-24	1549 - 1608	100	60 / 60	minus	ABC14588
MLOC	MLOC_18346.1	1590	2e-24	1173 - 1232	100	60 / 60	minus	ABC14588
JLOC1	JLOC1_12696.1	1781	8e-25	359 - 418	100	60 / 60	plus
Harvest35	U35_32042	440	3e-25	341 - 400	100	60 / 60	plus

Contig Sequence (440 bp)

>U35_32042 440 Hv_44K_v2
GAAAGGCCACAGCGGCACGCGCGGTGGTCCGAACTCGGAACCGACCCAAATCTCGCCGCC
GTCACTATGGATCCGAGCAGGCCGCTCCTGGGGCGCGGCGCCTTCCTCTCCTCGTCGGCG
CACGTCGCCGCCGCCATCATCCTCATCGCCTTCCTCATCCTCACCCTGCTCCGCCTCCCA
CTCGCCCCCTCCATCTCCATCTACACCCCTCCCCCCCTCGCCTCCACGCCCCACCACCAC
CTGCAGCACCAGGACCATGAAGATCAGGAGCAGGAGGACGCCTCATCCTGCGACCTCTCC
TCCCCGCTGGACTGCGCCGACCCGCGCCTCTTCCACCTCATGATGCGCAGCGCCATCGAC
GCTTTCCCCGCCGTCCATTTCGCCCGCTTCGGCCGCCCCGTCCCCGGCGACCCGCCCTCC
GCTTCCTGCGACATGGCATG

Homology of Contig U35_32042 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None