barSeed - Barley Seed Development Database

Probe CUST_26493_PI390587928

Source Contig U35_18959

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26493_PI390587928	Hv_44K_v2	ATGGCATGGCCTTTGTATGCACTCTGTTGTTTCCTTTCTACTATATATCTATATTGAGAT	1042	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65455.1	2402	2e-24	2333 - 2392	100	60 / 60	plus	ABC06621 ABC15766
JLOC1	JLOC1_43076.2	2004	8e-25	1936 - 1995	100	60 / 60	plus
JLOC1	JLOC1_43076.1	2409	8e-25	2341 - 2400	100	60 / 60	plus
Harvest35	U35_18959	1146	3e-25	1043 - 1102	100	60 / 60	plus

Contig Sequence (1146 bp)

>U35_18959 1146 Hv_44K_v2
CTCACCCCGTCCACAAGGCCACCATTGTTCCGAGGGGAATGGCTCTGGGCATGGTCACAC
AATTGCCAGAGAAGGACCAGACCAGCGTGTCGAGGAAGCAGATGCTGGCAAGGCTGGACG
TCTACATGGGAGGGCGGGTGGCTGAGGAGCTCATATTAGGGGAGAGCGAGGTGACGTCCG
GCGCGTCGTCCGACCTCAGGCAGGCGACCCGGCTGGCCAAGGCCATGGTGACCAAGTACG
GCATGAGCAAGCGCGTGGGCCTCGTGGCCTACAACTACGACGACGGCGGCAAGACCATGA
GCACGCAGACGCGGGGCCTGGTGGAGCAGGAGGTGAAGGAACTGCTGGAGACGGCCTACA
ACAACGCGAAGACGATCCTCACGACACACAACAAGGAGCTGCACGCGCTGGCGAACGCCC
TCATCGAGCGCGAGACCCTCACCGGCGCCCAGATCAAGAACCTGCTGTCGCAGGTGGACA
GCAGCAGCGACAGCCAGCAGCAGCCTCAGGCCGCCGAGGCTCCGCAGCAAACGCCGGCGG
CCCCTGCCTCGCCCCAGTCTCCAGCAGCAGCGGCTGCGGCCGCCGCAGCAGCTGCAGCGC
AGCAAGCGGCAGCTCAAGCCAAGGGGGTCGCGGGCATCGGGTCCTAGCCACACAGGGCAA
CAGAAGAACATCAATCCAGCAAAGTGCCATTAATTAGCATGCCTTTTTTTTTTATGGACA
ACAGGGCAAATTCTTAGCTGCCTCTGTCGAGAGCATCTGTACTCTGTAGTAATTTAGCTA
GTTGGGAGTACAATTTATATGTGTTCCTGGCTGTTGGTATGATGCAGCCTGAAGAAGAAG
AAGATCCATTCATGGCAGGGGATCTGCTGATTCATGTCAAGGAGATTTTGTAATCTCCGC
ATCAATTAGACCTCTTATCATTTGATCATCGCGTCACATCGTATGTGGCAATCTTGGATA
AGTTTTATCGCGTCGGTTATGCTCCGGTTTAGACGGTTGTTGTTGCTGCGCAACTTTTTT
CGATGGTAAAAGCTCACCAGGAATGGCATGGCCTTTGTATGCACTCTGTTGTTTCCTTTC
TACTATATATCTATATTGAGATTGATTCTTGATGCAATTGCATCAGGTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_18959 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g39260.1	716	8e-75	protein\|OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
Brachypodium v1_2	Bradi2g14330.1	715	1e-83
Arabidopsis v10	AT2G26140.1	717	2e-75	\| Symbols: ftsh4 \| FTSH protease 4 \| chr2:11131939-11135126 REVERSE LENGTH=717