barSeed - Barley Seed Development Database

Probe CUST_26491_PI390587928

Source Contig U35_18961

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26491_PI390587928	Hv_44K_v2	TAACTGACATTCTGAATTCTGAATATACAAGACAAGCTGGTAGACATGCTAGTTTCATTC	841	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368833	1790	2e-24	1716 - 1775	100	60 / 60	plus	ABC12828
MLOC	MLOC_20545.1	2422	2e-24	26 - 85	100	60 / 60	minus	ABC12828
JLOC1	JLOC1_14242.1	2484	8e-25	2340 - 2399	100	60 / 60	plus
Harvest35	U35_18961	919	3e-25	842 - 901	100	60 / 60	plus

Contig Sequence (919 bp)

>U35_18961 919 Hv_44K_v2
CTACCCTTGCAAACTTCCTGCTGGCAAAATGACCAGCAACACATTCAGGGGCATAAGTAT
GAGAACACAGGTCTTCATACTATTGTTCACTTGCCGCAGAAGGGTCCTGCATTTGACCTT
CTCTCGAGAATGCTCGAGTATGACCCCCGAAAGCGTATTACAGCTGCACAAGCTTTGGAG
CATGAGTACTTCCGGATGGACCCGCTACCTGGACGAAATGCACTTGTACCATCTCAGCCA
GGCGAGAAAATTGTGGCATATCCTGTTCGTCCAGTAGATACGTCAACAGATTTTGAAGGA
ACAACAAGCCTTCAACCAACTCAACCGCCATCAGGGAACGGACCTCCGGGTGGCCAGCCT
GTACCAAGACAAATCCCAAGGCAAATGCAACAGCCTATGGGTGGTATGCAAAGAATGCCT
CCTGGTGCAAACATGGGTGCCTTTGGCGCAGCGCCCCAAGCAGGCATGGTTGGGATGAAT
CCCGGTAACATTCCGATGCAGAGAGGCGCAGGTGGCCAGTCTCATCCACACCAGTTGAGA
AGGAAGGCTGATCAAGGGATGCAGATGCAGAACCCCGGGTACCCTCAGCAGAAGAGGCGC
TTCTGACATCCTCCCTCCTGGGCACCGGTTGATATAAATGTACTCATGGCATCATCATGT
ATGTACATCTTCCAGATAGATATACAATTATACATCGTGTGGTGGCCATGTAAGCTTGTT
GTTGTAGATTTATAGTGCTTATCTGCTAGCTTGGTAGGTTAAAGTAGCTGTAAGGGTCAT
TGTAGAGGAAATTTGGATGGTTGCCTTTTACAGCTACTTCGCTAAGCTGATCCATGCAGA
ATAACTGACATTCTGAATTCTGAATATACAAGACAAGCTGGTAGACATGCTAGTTTCATT
CTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42950.3	375	7e-94	protein\|cyclin-dependent kinase E-1, putative, expressed
Brachypodium v1_2	Bradi3g21650.1	471	2e-94
Arabidopsis v10	None