barSeed - Barley Seed Development Database

Probe CUST_26478_PI390587928

Source Contig U35_18974

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26478_PI390587928	Hv_44K_v2	GAGCAGATTTACACCTTAGACAGAAATGAGCAGTGTCGTGACAATGACTAATTTCATAGC	904	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10014.1	1280	7e-23	1214 - 1273	98	59 / 60	plus	ABC10871
JLOC1	JLOC1_6525.1	1482	4e-23	1336 - 1395	98	59 / 60	plus
Harvest21	ABC10871	964	3e-25	905 - 964	100	60 / 60	plus	ABC10871
Harvest35	U35_18974	964	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (964 bp)

>U35_18974 964 Hv_44K_v2
AAGATAACTTCCAACATGAATGAACGCTTTCCAGACGCTACACCAGATGAGCTTGATACG
AGTGATGTCACATGTATTATTTGCCGTGAAGAGATGACCACAGCAAAGAAGCTGCTTTGT
GGGCACTTGTTCCATGTACATTGTTTGAGGTCATGGCTAGAGCGCCAACATACTTGCCCA
ACATGTAGAGCTCCAATTATCCCCCCAGATAATGGACGTGCAGCATCAGCACGACAGCAT
GGAGCTCAACCTGGAGTTCAGCCTGGTGCAGGTGCTGGTACTCCAAATTCAGGAGGAGCA
CCAACTGAGAACGTGAACATGCGTCAAGCAAAACTTGAGGCTGCTGCTTCAGCTGCTTCC
TTGTATGGGAGATCATTTGCTTATCCTCCAGTGAACACTTTGAATAGGCATTCAGGACCT
CTGCATGCTACACCAAGTACTTCACAATCAGGAGAAGCAAGTACTTCCACCGGCCATCCA
TTGGAACCTCAGCCTTCTTATTCAACTGGTCCAGTTAGTTCAATAACAAGCAGCCGGGAC
CCTGAAAATTCACTACAAAAGGCATATGAAAAGGCTATAAGGAGCCAGATAGAGGTGTTG
CAAATCCAATTGCAAATGATGCAGCAAGGGGCCACCACCACATCGGCAACTGGCAATGAG
AGTGCTGAGCAAGCCGAAAAATAAGTGAAGTGGATAATAGGCGAAGAAGGGGTCTAGAAA
AACATATGTTATATATGGAGGTTGTGCGATACTTAGCATAAACAAACGACATAGATGGAG
ATTGTGCAATACATGAGGTGGAACTTTGCCGTGATGTTTTGTTGATCTTGGTAGACTCGG
TTATCAACATCAGATGGTCGTTTGTTTGGTCTGGTGATTTGCTTAGTTTATATTTTGTTG
TTATGAGCAGATTTACACCTTAGACAGAAATGAGCAGTGTCGTGACAATGACTAATTTCA
TAGC

Homology of Contig U35_18974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g19680.1	501	3e-86	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi1g43000.1	495	6e-106
Arabidopsis v10	None