barSeed - Barley Seed Development Database

Probe CUST_26477_PI390587928

Source Contig U35_18975

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26477_PI390587928	Hv_44K_v2	TACCCTCAAGGCTGGTCTGGTGAAGATCAGAGGTATGCAAACACAAGCATTTCACTTAAA	1116	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.193	1.179	1.078	0.945	0.381	0.410
Raw	197.313	314.072	244.741	342.274	47.119	55.802

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65005.1	4727	7e-23	4669 - 4725	100	57 / 57	plus	ABC10187
MLOC	MLOC_65005.2	1566	7e-23	1508 - 1564	100	57 / 57	plus	ABC10187
JLOC1	JLOC1_42737.5	4391	4e-23	3964 - 4020	100	57 / 57	plus
JLOC1	JLOC1_42737.4	3411	4e-23	2984 - 3040	100	57 / 57	plus
JLOC1	JLOC1_42737.3	3484	4e-23	3057 - 3113	100	57 / 57	plus
JLOC1	JLOC1_42737.2	1901	4e-23	1474 - 1530	100	57 / 57	plus
JLOC1	JLOC1_42737.1	4917	4e-23	4490 - 4546	100	57 / 57	plus
Harvest21	ABC10187	1190	3e-25	1117 - 1176	100	60 / 60	plus	ABC10187
Harvest35	U35_18975	1190	3e-25	1117 - 1176	100	60 / 60	plus

Contig Sequence (1190 bp)

>U35_18975 1190 Hv_44K_v2
GGTGGTAGAGGATACGAAAGGGGTGGTAGAGGCGGTGCAAGGTTCAGAGATGGTTCTCCA
CCATATGGAAGAGGAGGCAGGTCACACGGGAGGGGGGGCTATAATGGTCCTGGAAAGGAG
TTCATTCTAATTGATGGAGAATATGTTCACAGGAATGATCCAAATCTTTCACCAAGAGAA
GGTGATTGGATATGCCAGAATCCAAGCTGTGGAAATCTCAACTTTGCTCGAAGAAGTCAC
TGTAACAACTGCAACAAACACCGCTATGAGTCTAGTCGCAGTCCTCACAGGGGTTACTTT
GACTCGCCTCCACGGGTGCCTGCAAGGCCGCTTGGTCCACCAAGTGATCGTGCCCCTCCA
AGAGAAATGGCCAGGTACAAACCAGCACCCCGTGGTTGGGGTGTGGGTGATCCTAGAAGC
TATCCTGCTAGATCACCTCCAGATCGTGTAGGACGATTTCCAGAGCCATTGCAGAGGGAA
AGGGGCTTCCGTGGTGAACGTGAGTTGCGGGACCCTGTGAAGTTTGAGTGGTCTGCTGCG
GAGTACAAGCAGAGGGAGCGTCCACATGGTGGGCTGTATCTTGACAGGAGCCGGTCTCCT
CAGGGGAACTGGGGGAGCAATATGCGGGACAGAAGCAGATCTCCTGCAGGCAACAGACCA
ATGAAGGGTGCTTTCTTGGGCAGAGGTCGACCAGACCTAGAGTATGCGGGTTCATATGCA
GGCCGAGGGCGGTTGGATGCTGGGCGTGGGCGTGGACGTGGTCGGGGCCATGTTTACAGG
CCAGGAGGTGATCCATACCCCGGCGAGGGTCGAGATGATCGGCGCGCTGCTCTTCATGGT
AGGGATGATGGGCGCTACTAGTTGTGAACTGACTGGGCACATCCTTGGAACTGATGCTCT
GGGAAGAAAAGTCTAGTTAAGACGGTGCAGGTCCAGCCTGTAATATTAAACTCCCCGTAC
TGTTTCCTCAACTGTCATGACATTTGCAATGTTCTGAAATGAACAGGTCCACTATGCATT
GGATGTTGGTATTATTTTAGTCCAGTGAGCAGCTGGGATGTTATGTCAAGCAGATCTGAT
TATTTGGTTCTTTTGGGTTGTTTCTTGGTTGTGTTGTACCCTCAAGGCTGGTCTGGTGAA
GATCAGAGGTATGCAAACACAAGCATTTCACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22700.1	319	9e-82	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi1g41430.2	348	2e-110
Arabidopsis v10	None