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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_26473_PI390587928Hv_44K_v2CTCGTACATGAGAAGGGTGTATGCCTTCTCATCTCTATCTTTTTAATTTGAAACATGGTA466GeneList: black
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0110.0120.3112.2123.1455.119
Raw 2.7134.553192.4261747.9901084.8401922.873



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_36125.48885e-22764 - 8219857 / 58plus
JLOC1JLOC1_36125.39045e-22780 - 8379857 / 58plus
JLOC1JLOC1_36125.27165e-22592 - 6499857 / 58plus
JLOC1JLOC1_36125.18035e-22679 - 7369857 / 58plus
Harvest21ABC105757293e-25665 - 72410060 / 60plus
Harvest21ABC105745443e-25464 - 52310060 / 60plusABC10574
Harvest35U35_189807293e-25665 - 72410060 / 60plus
Harvest35U35_189795473e-25467 - 52610060 / 60plus



Contig Sequence (547 bp)

>U35_18979 547 Hv_44K_v2
GAGGCTATGATCTAAGAGGGCTCACAGATCATATTGGAGAACTTTTCATCAGTCGTGAGA
ATATCACCAAAATGGATGGAAACTCAAGGTCTTCATCAAAACGAGCTAAGTTGTTGGTAA
CGAAGAAGGCTCCTCGGATTAAGCTTGCACGCTCGTTCCGTAATGCTGCTGCAATTCTAG
AAGCTGATGCACAATCTGAAGCGGAGGTTGGGTTTTCCTCTACAGCACCCCAGATTTCAG
CGGATAGCAGCGCAACTGGGCCACTCCAGCCAAGTGCAGCAGGGAGCCAAGATGAACCGC
GCGAGTAGTCAACTGGGAGCAATTTATTTGCTATGGTTACAAAAGTCTATATACTTGCAG
AATAAAAGTTCCAAAGACTTGGCGTGTTAGCCATTTCAATTAAAATAAGTTACACTACAA
GTCCATTGTGTCTTGTAGTTAAGCACCAAAACCTTTATATGTGTTACTCGTACATGAGAA
GGGTGTATGCCTTCTCATCTCTATCTTTTTAATTTGAAACATGGTATACTAAAAAAAAAA
AAAAAAA



Homology of Contig U35_18979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None