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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_26472_PI390587928Hv_44K_v2ATTGAGGACATACCGATGTGTTTCTTGCCTGAAGGCTGAAAATGCCTACCTGAAAGCTAA280GeneList: black
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0100.0100.2402.3042.8074.645
Raw 3.1958.766413.8415445.5232708.2274841.633



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_55940.18416e-24346 - 40410059 / 59minus ABC10574
MLOCMLOC_55940.28256e-24346 - 40410059 / 59minus ABC10574
JLOC1JLOC1_36125.48883e-24381 - 43910059 / 59plus
JLOC1JLOC1_36125.39043e-24397 - 45510059 / 59plus
JLOC1JLOC1_36125.18033e-24296 - 35410059 / 59plus
Harvest21ABC105757293e-25281 - 34010060 / 60plus
Harvest35U35_189807293e-25281 - 34010060 / 60plus



Contig Sequence (729 bp)

>U35_18980 729 Hv_44K_v2
GGTGACCATCCTATAAAGCACCACTTTCTCTCCCGCATAATGAAAGAAGCATTGACCCCT
ATGATCTAAGAGGGCTCACAGATCATATTGGAGAACTTTTCATCAGTCGTGAGAATATCA
CCAAAATGGATGGAAACTCAAGGTCTTCATCAAAACGAGCTAAGTTGTTGGTAACGAAGA
AGGCTCCTCGGATTAAGAAGCCCTCCATCAAGCAACAGAATGAGCTTCTAGCGATTGAGA
ACAAAATATTGGCGATTGAGAACGAAAAAATGCGCGAGGCATTGAGGACATACCGATGTG
TTTCTTGCCTGAAGGCTGAAAATGCCTACCTGAAAGCTAAGCTTGCACGCTCGTTCCGTA
ATGCTGCTGCAATTCTAGAAGCTGATGCACAATCTGAAGCGGAGGTTGGGTTTTCCTCTA
CAGCACCCCAGATTTCAGCGGATAGCAGCGCAACTGGGCCACTCCAGCCAAGTGCAGCAG
GGAGCCAAGATGAACCGCGCGAGTAGTCAACTGGGAGCAATTTATTTGCTATGGTTACAA
AAGTCTATATACTTGCAGAATAAAAGTTCCAAAGACTTGGCGTGTTAGCCATTTCAATTA
AAATAAGTTACACTACAAGTCCATTGTGTCTTGTAGTTAAGCACCAAAACCTTTATATGT
GTTACTCGTACATGAGAAGGGTGTATGCCTTCTCATCTCTATCTTTTTAATTTGAAACAT
GGTATACTA



Homology of Contig U35_18980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None