barSeed - Barley Seed Development Database

Probe CUST_26468_PI390587928

Source Contig U35_18984

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26468_PI390587928	Hv_44K_v2	AAATTACAGAGAGATCAGATTGCAGCAGTACAAAAACTACGAAAACATTCCTAATTCTGG	330	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363206	1670	2e-24	434 - 493	100	60 / 60	plus	ABC03950 ABC03951 ABC10317
MLOC	AK376393	1599	2e-24	330 - 389	100	60 / 60	plus	ABC03950 ABC03951 ABC10317
Harvest21	ABC31980	608	1e-23	313 - 372	98	59 / 60	plus
Harvest21	ABC10317	733	1e-23	331 - 390	98	59 / 60	plus	ABC10317
Harvest35	U35_18984	733	3e-25	331 - 390	100	60 / 60	plus

Contig Sequence (733 bp)

>U35_18984 733 Hv_44K_v2
GAGAGAACCTATCTCCGCTCGGCTTGGGCGGCGCGGTGTCTCTGAGGTAGCAGGTCTGTG
ACGCCTCTCTCGTAGGCGAGGATCGATGCACACTTATCGTGGCCGTGAAGTCGAGGACTG
GTTTGATGATTCTGATTCGGATGACCACGCCGACGACAACACGGGGGACGACGGGCACCA
TGAGCAAGGACCAAGGGACTCCGATTTGGACCTGGATGATGAAGATCGTGCCTTTATGAG
TCAGTTTCCAGATACTTGGGGGGCAGCGCCCACAAGAAAAGAAATAGACATCCAAGGAAT
ACAATGGGAGAGGCTGGCTATCACACGTGAAAATTACAGAGAGATCAGATTGCAGCAGTA
CAAAAACTACGAAAACATTCCTAATTCTGGAGAAGCAGCAGCCGAGGAATGCAAACAGAG
TGAGAAAGACGGAATGTATTACGAATTCAGAAAAAATACTAGATCTGTAAAATCAACCAT
ATTACATTTCCAGCTGAGAAATTTAGTATGGGCGACATCCAAGCATGATGTCTACCTAAT
GTCAAATCACTCAGTCCTTCATTGGTCTGCATTGAGTGGTGTGGACACTGAACTTATGAA
CGTCCATGGTCATGTGGCACCAAAGGAGAAGCACCCAGGAAGTCTATTAGAGGGTTTTTC
TCAGACTAAAGTTAGTACCATGGCAGTCAAGGACAATTTGCTGGTGGCTGGCGGATTTCA
AGGGGAGTTAATC

Homology of Contig U35_18984 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48964.1	447	2e-87	protein\|WD-40 repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g56640.1	447	9e-93
Arabidopsis v10	AT5G56190.2	447	5e-73	Transducin/WD40 repeat-like superfamily protein \| chr5:22742654-22744909 FORWARD LENGTH=447