barSeed - Barley Seed Development Database

Probe CUST_26464_PI390587928

Source Contig U35_18989

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26464_PI390587928	Hv_44K_v2	CCAAGACGAAAGCAAAACATCGAGACGTTGATTTGATGGACCTTGCTTTATTAGTATATA	1307	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	18.411	4.201	1.010	0.988	0.718	0.892
Raw	512.759	182.303	39.263	61.607	15.240	20.893

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_22373.1	2188	8e-25	2020 - 2079	100	60 / 60	plus
Harvest21	ABC10328	1402	3e-25	1308 - 1367	100	60 / 60	plus	ABC10328
Harvest35	U35_18989	1402	3e-25	1308 - 1367	100	60 / 60	plus

Contig Sequence (1402 bp)

>U35_18989 1402 Hv_44K_v2
GCGGAGCTGTCCCGCCTCGCCGGCAAGATGAGCGTGTGGCTCATCCCGCAGCACTTCGCC
ATGGCCATGCTGCTCCCGCTCACCCGCTTCCTGCAGAGCCAGCTCAAGAACTGGGTCACC
GCCGCCACCGCGGGGGTCACGCTCGCGCTCCACGTCCTCGTCACCTACCTCCTCGTCACC
CGCTTCCAGCTCGGCTACGCCGGCGTGGTCGTCGCCGCCGACGTCGCGTGGTGGGTCGTC
GTGCTGGGGCAGTTCTTGTACGTCGTCTGCGGCGGCTGCCCGCTCTCGTGGAGGGGCTTC
TCCGTGGAGGCCTTCGCCGACTTCTGGGACTTCATCAAGCTCTCCACCGCATCCGGCGTC
ATGCTCTGCCTGGAGAACTGGTACTACAAAGTGCTTGTGTTGCTTACGGGGTACTTGCCG
AACGCTGAGATCGCCGTGGACGCCCTCTCCATATGCTTGACGATCAACGGATGGGAGATG
ATGATTCCCATAGGGTTCCTGGCGGCCACTGGCGTGCGGGTGGCAAACGAGCTCGGCGCG
GGCAGCGGCAAGGGGGCGCGCTTCTCCATTGTCGTCTCCATCACCACCTCCGTGGTGATC
GGGCTCGTCTTCTGGTGCCTCATCCTCACCTACAACGACCAGATCGCGCTCCTCTTCTCG
TCGGGGAAGGCCGTGCTCGACGCCGTGCACAATCTCTCCATGCTGCTAGCATTCACCATC
CTCCTCAACAGCGTGCAGCCCGTACTCTCTGGGGTGGCTATTGGTTCTGGATGGCAAGCA
TTGGTCGCCTATGTCAACATCGGATCCTACTACCTGGTCGGGGTGCCGATCGGGGTCATA
CTGGGCTGGCCACTCGGATTCGGAGTTCGGGGAATTTGGTCTGGGTTGATTGGCGGGACC
GCTGTTCAGACGCTGGTGTTGGTCTATCTCACCATGAGATGTGATTGGGACGATGAGGCC
AAGACCACCAGTGCACGGATGAGAAAATGGGCCAGCACAAAATGAGAGCTACTCGACAAT
ATTCTTGTCAACTTTCAGCTCCCTTTGACATAGGGGAAAAGGAGCTCGGCAGCAGGAGGT
TCAGAAGTAAAAACGTTCAGAATATGGGGAGGAAGTAGTTGAGAAGAAAATGCGGGCGTG
TGTTTCGCTAGGGAGCAAGCATGCCGGCGGCCTGTTTCTCAAGATATCCGTTGGTCACGA
AAATTCAGTGTGGTATCAGAGAGCTCAAAACCATGTATTTCTACGATATCTAAAACCATA
TGTAGTACGAAGAGAAAAGGAGGAATGTGGTATAAATTCAAATTCCACCAAGACGAAAGC
AAAACATCGAGACGTTGATTTGATGGACCTTGCTTTATTAGTATATATAATCCTTAGATG
TTCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g37432.2	391	8e-172	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi3g38450.1	490	0.0
Arabidopsis v10	AT5G65380.1	486	6e-126	MATE efflux family protein \| chr5:26123241-26126352 REVERSE LENGTH=486