barSeed - Barley Seed Development Database

Probe CUST_26459_PI390587928

Source Contig U35_18993

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26459_PI390587928	Hv_44K_v2	GCCGATGGCGGTTTGTTTATTTTCTTTGGCAAGTGAGCTGGTAGTTGGAACGCCAAAAAA	2268	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.971	1.490	1.300	1.025	0.485	0.517
Raw	605.153	1422.343	1103.649	1329.253	223.543	264.680

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54040.2	4610	5e-22	4438 - 4492	100	55 / 55	plus
JLOC1	JLOC1_54040.1	4619	5e-22	4447 - 4501	100	55 / 55	plus
Harvest21	ABC15885	1264	3e-25	1191 - 1250	100	60 / 60	plus	ABC15885
Harvest35	U35_18993	2342	3e-25	2269 - 2328	100	60 / 60	plus

Contig Sequence (2342 bp)

>U35_18993 2342 Hv_44K_v2
TTTGATTATTCAAAGAAATGATGGATTCTGATGTTACGAGTGGGCAAGGGGCATTTGATA
GGAAGGATAGCTTTGGGAATGAAGAGCCAAGAGGTGGCCAGGTTGATGGTACAGTTTCAG
ATCCTCATCCCACGTTTAAGGTCGGAGTGAATGCCACACACTTGATTACCCCATCTGAAA
TTATTTCAGGTGTGCTTCCATCTGCTGAATCGACTGCTAATGGCAGCCCACCGAACGTAG
AAATGGAGTCAAAACTTGTGGTTGAGAAAAAAACAGATCAAAATGTTGGATTTGAGGATG
TTAAGGAGACCCAAATTGTTCAAGAGAAAATGGAGAGGCTTAACATGTCTTCAGAGCAAA
CTGTGGAGGCAATTAGTGAACGCTCGGTAACAACTGACAAGTACAGCGTGGAAGATTCAC
AGAGATCAGATCCCACACTTTTGAAACAACATTCTGGTGCTGGGGATGAAAATCTTCCAA
GAAGAACAGCTGAAGCTACTGAAAAAATCAATGGCTCTTCTTCAAGGAACTTGCAGTTAC
CCTCAGCTACCAAAGAGGAGAAAGTTCTGCATCCTCAGCTGTCTGGGCAGATGTCTCCTC
TTACACGCACTTTCAACTCTACTGATTCATCACATGAACATCCAAGCAGTACAAACCCTG
CTATTGATTCTGTCCCGCAAGTAGCTGCTATTCAAGGAACATTGCAGCAGCTTATGGCAA
TGCATACTGACATGCAAAAGCAGCTGAACGCAATTGTGTCTGCTCCTATTGCAAAGGAGG
GCAAAAGGATCGAGACATCACTCGGGCGTAATATTGAGAAGTCCATAAAGGCTAACGTTG
ATGCTATGTGGGCTCGTTTCCAGGAGGAAAATGCAAGGCATGAAAAGGTTGAAAGAGAGC
GAATGCAGCAGATTGCTACTCTAATAACAACATCTGTAAACAAGGACATTCCTGCTATGC
TGGAGAAATCGTTAAAGAGAGAAATATCGTTGTTGGGGCCCACCATTGCACGAACAACAA
CACCTATCATTGAGAAGTCCTTGTCTTCTGCTGTTTCGGATTCACTTCAGAAAGTTCTTG
GGGAAAAGGTTGTGAATCAGCTGGATAAGTCCGTAAGTACGAAACTTGAAGCTACAGTTG
CTAAGCAGATCCAAACACAGTTCCATTCAACTGCCAAGCAGGCACTTCAGGATGCTTTAC
GGTCAAGCTTTGAGTCATCAATTATCCCAGCATTTGATCAGTCTTGTAAGACAATGTTTG
AGCAAGTGGATGGTGCATTCCAGAAGGGCATGTCTGAGCATGGTACTGCTATCCAGCAGC
AGGTCGCAGCAGCACATAGTCCATTGGCACAGACTCTAAGGGAAACAATCACTTCAGCGT
CATCAATTACCCAGGGTCTTACATCGGAGTTACTTGATGGCCAGCGCAAGCTTTTGGCAC
TAGTTGCATCAGGGAACCCAATATCACATAATACTAGTGCTTTGCAGCCCATCAGTGGAC
CAATACCTAATCTCCCCGAGGCTGATGTTCCGCTGGACCCGATGAAGGAGCTAACCAGAC
TAATATCTGAGCAAAAATTCGATGAGGCGTTTACAATGGCACTTCAAAGAAGTGATGTCT
CCATGGTGTCTTGGTTGTGCTCTCAGGTTGATTTGCAAGGATTATGTAGACTGAACCCTG
TTCCTCTGAACCAAGGGGTCCTTCTGGCCCTTTTCCAGCAACTGGCATGCGACATAGGCA
ACGACACACCCCTGAAGCTTCAATGGATGACAGCGGTCGCCATGGCAATCCAACCAACCC
ATCAGATGATCTCAGCGCATGTGAGGCCAATATTTGAGCAAGTCTATGGTGTCTTGGCCC
GCCAACAGTCGGTACCAGGAACCAGCCCACTGGAAGCGAGCAACATCCGCCTAATGATGC
ACGTAATCAACTCGGTTATGATGACCCACAAATAATATGATAGGGCGCATTCTGTAGCCG
CTGTAAGTTTGAACCACCATATATGATCTATTAGTGGGTCCGTGTACAGAGGAAGTTTTG
AGAAGTGGCTCTTGAACTGGCAAAGTGGCAGTGATACCTTACCCCAACCTTAGAAGGTGA
TGTAAATTGGTTATGTTTGAGTCTGTACTTATGGCGCCTACCGCCTTATTCGGTGCAGTG
TTTTTAGCTGGTTACTTGCATTCCTTGCACATGTGTCGTGTGTGAATCCTGGTGCTGACG
ATGGCGGTTTAAGTGTTCTGGTGGTGTGAACCATGGAGCTGCTGTGGCGCCGATGGCGGT
TTGTTTATTTTCTTTGGCAAGTGAGCTGGTAGTTGGAACGCCAAAAAAAGAAAAAAAAAA
AA

Homology of Contig U35_18993 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g19660.1	1335	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g43097.1	1317	0.0
Arabidopsis v10	AT3G13290.1	1340	6e-161	\| Symbols: VCR \| varicose-related \| chr3:4297529-4303113 FORWARD LENGTH=1340