barSeed - Barley Seed Development Database

Probe CUST_26452_PI390587928

Source Contig U35_15004

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26452_PI390587928	Hv_44K_v2	TGTCACCTTGGTTTATTTCAACTCCCAGATATATATACACTACTATTCCCTCTCTGCTAA	1283	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.646	5.527	1.199	0.551	0.638	0.568
Raw	82.448	100.628	17.848	12.947	3.167	3.126

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02277	890	8e-21	819 - 870	100	52 / 52	plus	ABC02277
Harvest35	U35_15004	1362	3e-25	1284 - 1343	100	60 / 60	plus

Contig Sequence (1362 bp)

>U35_15004 1362 Hv_44K_v2
ACCTTCCTTGATCCCCACCCACACTCACCCCCACCCACCGTCCTTCCCGGCGGTGTCAGC
CATGGCCGCCGTCACGGCCGCGGCCGTCTCCCTCCGGGCCGCCACCACCACCTCCACGTC
CCCGTCCAGCGCGCCGCAGCACTCCCACTGCAGCTTCCCGTCCGCCGCAAGAACCGTCGT
CTCCCGCCGCGGCGCGCTCGCCATCCGAGCGCAGGCCATCTCCACCGACGCTGCGGCCGC
GGCGCCGGTGAAGGAGAAGAAGGTGTCCAAGAAGCAGGAGGAGGGGGTGGTGACCAACAC
GTTCCGGCCCAAGGAGCCGTACGTGGGCAAGTGCCTGCTCAACACCAAGATCACCGCCGA
CGACGCGCCCGGGGAGACGTGGCACATGGTCTTCTCCACCGAGGGCGCCGTGCCCTACAA
GGAGGGCCAGTCCATCGGCGTCGTCGCCGACGGCGAGGACAAGAACGGCAAGCCCCACAA
GCTCCGCCTCTACTCCATCGCCAGCAGCGCCCTCGGCGACTTCGGCGACGCCAAGACCGT
CTCGCTGTGCGTCAAGCGCCTCGTCTACACCAACGACGCAGGGGAGGTCGTCAAGGGCGT
CTGCTCCAATTTCCTCTGCGACCTGAAGCCTGGCGCCGATGTCAACATAACAGGGCCAGT
AGGCAAAGAGATGCTCATGCCTAAAGACCCCAATGCTACTATTATCATGCTTGCGACAGG
GACGGGTATCGCGCCGTTCCGGTCATTCCTGTGGAAAATGTTCTTCGAGAAGTATGATGA
CTACAAGTTCAATGGCCTAGCTTGGCTCTTCTTGGGAGTCCCGACCAGCAGCTCTTTGCT
CTACCCAGAGGAGTTTGGGAAGATGAAGGCGAAGGCGCCGGACAACTTCCGGGTGGACTA
CGCCATCAGCAGGGAGGAGACCAATGCGGCGGGAGAGAAGATGTATATCCAGACAAGGAT
GGCGGAGTACAAGGATGAGCTGTGGGAGCTCCTGAAGAAGGACAACACCTATGTGTACAT
GTGTGGGCTGAAGGGCATGGAGAAGGGTATTGATGAGATCATGGTGCCACTGGCTGCAAA
AGAAGGGATCGACTGGATAGATTACAGGAAGCAACTGAAGAAGTCGGAGCAATGGAACGT
CGAAGTCTACTGATTCTTGTGTTTTACATTGTCGACACTTTTTCTTGTGCATATGTGCCG
ACGCACGCCTATTCGTGCGGTCGAAGAAGATTGATCTACGTACATAATAAAAGTAGATAA
AGAGTGTATTATTTCCTATGTTTTGTCACCTTGGTTTATTTCAACTCCCAGATATATATA
CACTACTATTCCCTCTCTGCTAAAAAAAAAAAAAAAAACATT

Homology of Contig U35_15004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g01850.1	363	protein\|ferredoxin--NADP reductase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g52020.1	367
Arabidopsis v10	AT1G20020.1	369	\| Symbols: ATLFNR2, FNR2 \| ferredoxin-NADP(+)-oxidoreductase 2 \| chr1:6942851-6944868 FORWARD LENGTH=369