barSeed - Barley Seed Development Database

Probe CUST_26450_PI390587928

Source Contig U35_15005

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26450_PI390587928	Hv_44K_v2	AACCAATTGTTGGCTCCTCTGATCAATCGATCAATGTAGATATTGACACACACGAAAAAA	1404	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.300	5.886	1.331	0.843	0.221	0.381
Raw	555.797	750.369	140.041	154.923	12.943	24.625

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02278	1386	8e-21	1266 - 1317	100	52 / 52	plus	ABC02278
Harvest35	U35_15005	1523	3e-25	1405 - 1464	100	60 / 60	plus

Contig Sequence (1523 bp)

>U35_15005 1523 Hv_44K_v2
TCGAGCACTGTTGGCCTATCTGGATGCGGTCGGTGAGCAGAGCACCACTTGCTTCTCACC
TCGTCTCCCTTCCACTCGCTCCGTCGCCTCCTCTCATCCCAAATACCACCACCCAATCCA
CTCACACACCGCACGTCCACACTCTCTCCACCCACACTCCACCATGGCCGCCCAGCTGAC
AGCCGCGCTGCCGTCCTACTCGCCGGCCACAACCAAGACCGCCGGCGCCTCGTCGGCGGC
CAGCCACTTCCTGTACTACCCCAGCCGGCCGCGAAATGCAACCAGGGGCGTGCGCGCGCA
GGTGTCGACGACGGAGACCGCGGAGGCGGCGCCGGCCAAGCCGGTGAAGATCTCCAAGAA
GCAGGACGAGGGGGTGGTGACCAACAAGTACCGCCCCAAGGAGCCCTACGTGGGGCGGTG
CCTGCTCAACACCCGCCTCACCGGCGACAACGCGCCCGGGGAGACCTGGCACATGGTCTT
CAGCACCGAGGGCGAGGTGCCGTACCGGGAGGGGCAGTCCATCGGGGTCATCGCCGACGG
CGAGGACAAGAACGGGAAGCCCCACAAGCTCCGCCTCTACTCCATCGCCAGCAGCGCGCT
CGGCGACTTCGGCGACTCCAAGACCGTGTCGCTCTGCGTCAAGCGCCTCGTCTACACCAA
CGACGCCGGGGAGCTCGTCAAGGGCGTCTGCTCAAACTTCCTCTGTGATCTGAAGCCGGG
TTCAGAAGTGAAGATCACGGGGCCGGTGGGCAAGGAGATGCTCATGCCCAAGGACCCCAA
CGCAACCATCATCATGCTCGCCACGGGTACCGGTATCGCGCCGTTCCGCTCCTTCCTGTG
GAAGATGTTCTTCGAGCAGCACGACGACTACAAGTTCAATGGCTTGGCATGGCTCTTCTT
GGGTGTCCCCACAAGTGACACTCTGCTCTACAAGGAGGAGTTTGAGAAGATGGTGGAGAT
CGGCGGGGAGAACTTCCGGCTGGACTTCGCGGTGAGCAGGGAGCAGACGAACGCGGCCGG
GGAGAAGATGTACATCCAGACGCGGATGGCCGAGTACAAGGAGGAGCTCTGGGAGATGCT
CAAGAAGGACAACACCTACGTCTACATGTGTGGGCTTAAGGGCATGGAGAAGGGCATCGA
CGACATCATGGTCGACCTCGCCGCCAAGGACGGCATCAACTGGCTTGACTACAAGAAGCA
GCTCAAGAAGGCTGAGCAGTGGAACGTGGAGGTCTACTGATCATCATCATCGTGTCATTG
CCATGGAAGGACATGCATGCTAATGTTTTTCCCACCTAGTTTTCATTTTTACTCCAGATG
GATATTGTGCAAAGCTCAAGCTTCGGCCATATATACGCCTTGTATCTAGCGATGAGTGTG
TAGCACCGCGATCATCAAATGTTAAACCAATTGTTGGCTCCTCTGATCAATCGATCAATG
TAGATATTGACACACACGAAAAAAAAAAAAAAAAACACTTTCTCATCTTATACACCATTT
GCAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g01340.2	367	protein\|ferredoxin--NADP reductase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g00660.1	359
Arabidopsis v10	AT5G66190.1	360	\| Symbols: ATLFNR1, FNR1 \| ferredoxin-NADP(+)-oxidoreductase 1 \| chr5:26451203-26453012 REVERSE LENGTH=360