barSeed - Barley Seed Development Database

Probe CUST_26448_PI390587928

Source Contig U35_15006

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26448_PI390587928	Hv_44K_v2	AACACGTTCCGGCCCAAGGAGCCGTACGTGGGCAAGTGCCTGCTCAACACCAAGATCACC	399	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367092	1425	2e-24	310 - 369	100	60 / 60	plus	ABC02275 ABC02277 ABC02278 ABC26803
MLOC	MLOC_70482.1	4644	2e-24	489 - 548	100	60 / 60	plus	ABC02275 ABC02277 ABC02278 ABC26803
MLOC	MLOC_70480.1	3799	2e-24	549 - 608	100	60 / 60	plus	ABC02275 ABC02277 ABC02278 ABC26803
JLOC1	JLOC1_46773.1	2418	8e-25	526 - 585	100	60 / 60	plus
Harvest21	ABC46336	381	3e-25	277 - 336	100	60 / 60	plus
Harvest21	ABC02276	1415	3e-25	345 - 404	100	60 / 60	plus
Harvest35	U35_15006	564	3e-25	400 - 459	100	60 / 60	plus
Harvest35	U35_15004	1362	3e-25	296 - 355	100	60 / 60	plus

Contig Sequence (564 bp)

>U35_15006 564 Hv_44K_v2
ACCTCCCCTGCCTTCCACTCATCTCCCTCCACTCTATCCACCTTCTTCTCTCCCGCCCCC
TTAACCTCCCCCATCCCTTCCACCGGCAGCCGAGCCCCGCCCCTAGCCAGCCACCTTCCT
TGATCCCCACCCGCACTCGCTCCCCACCCACCGTCCTTCCCGACGGTGTCAGCCATGGCC
GCCGTCACGGCCGCGGCCGTCTCCCTCCGGGCCGCCACCACCACCTCCACGTCCCCGTGC
AGCGCGCCGCAGCACTCCCACTGCAGCTTCCCGTCCGCCGCAAGAACCGCCGTCTCCCGC
CGCGGCGCGCTCGCCATCCGGGCGCAGGCCATCTCCACCGACGCGGCGCCGGTGAAGGAG
AAGAAGGTGTCCAAGAAGCAGGAGGAGGGGGTGGTGACCAACACGTTCCGGCCCAAGGAG
CCGTACGTGGGCAAGTGCCTGCTCAACACCAAGATCACCGCCGACGACGCGCCCGGGGAG
ACGTGGCACATGGTCTTCTCCACCGAGGGCGCCGTGCCCTACAAGGAGGGCCAGTCCATC
GGCGTCGTCGCCGACGGCGAGGAC

Homology of Contig U35_15006 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None