barSeed - Barley Seed Development Database

Probe CUST_26443_PI390587928

Source Contig U35_15010

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26443_PI390587928	Hv_44K_v2	GAAAAAGTACCGATCATGGGTGGACAGACTAGTTATCTTGCAGACTGCTTCTGACAGTTG	1210	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6173.1	1715	2e-24	1237 - 1296	100	60 / 60	plus	ABC02724 ABC49964
MLOC	MLOC_6173.2	1597	2e-24	308 - 367	100	60 / 60	minus	ABC02724 ABC49964
JLOC1	JLOC1_4009.1	1881	8e-25	1237 - 1296	100	60 / 60	plus
Harvest21	ABC02726	1722	3e-25	457 - 516	100	60 / 60	minus
Harvest21	ABC02723	410	3e-25	339 - 398	100	60 / 60	plus
Harvest21	ABC02724	1672	1e-23	1211 - 1270	98	59 / 60	plus	ABC02724
Harvest35	U35_15010	1726	3e-25	1211 - 1270	100	60 / 60	plus

Contig Sequence (1726 bp)

>U35_15010 1726 Hv_44K_v2
GGGTGGTTCCGAGCCAATCACGGTCTCCACGAACCGTATTTCACCCCCCAACCGCACCAA
CCCTATCCCTCCCCTCTTTTCTTTCTTTCTTTCTGCGGTCACCGGCGGGCGGCGGGGAGC
AGATCGACCGCGCGGCGGCAGGCCACCGGACTCCGTCAAGGCTGCTAAAAATGGATAAGG
TCAAGGGCTCTGCGCGCCTGATGATTGTTTCAGATCTCGATCACACGATGGTCGATCATC
ATGACGAAGAGAACCTGTCTCTGCTTAGGTTCGGGGCCCTTTGGGAGTCTGTCTACTGCC
AGGATTCCCTTCTCGTCTTCTCAACAGGAAGATCGCCTACTCTGTATAAGGAATTGAGGA
AAGAGAAGCCTATGCTCACTCCAGACATCACCATCATGTCCGTGGGCTCTGAGATAACGT
ATGGTGAGGCCATGGTTCCTGATGATGGCTGGGAGGAATATCTCAACAATAAGTGGGACA
AGAATATTGTTCTTGAGGAGACGGCTAAGTTTTCTGAGCTCAAGCTCCAGCCAGACACAG
AACAGCGTCCACATAAGGTCAGCTTTTTGGTCGACAAGAAGAACGCTCAGGGAGTGATCA
AGTCTCTCTCCGACAAGTTTGAGAAACGTGGGGTAGATGCGAAAATAATCTACAGTGGTG
GCCAGGATCTCGACATATTAGCTCAAGGGGCTGGAAAGGGTCAAGCACTTGCATATTTGC
TCAAGAAGTTAGGTTCATGCGGAAAAACACCCAACAATACTCTTGTTTGTGGTGACTCTG
GCAATGATGCAGAATTATTCAGTATCCCTGGTGTACATGGTGTCATGGTTAGCAATGCCC
AAGAGGAACTACTCCAGTGGCATGCAGAAAATGCGAAGGATAATCCTAAGATAATTCATG
CAACTGAGAGGTGTGCTGCTGGTATTATTCAAGCTATCGGGCACTTCAAGCTAGGACCTA
ATGTTACTCCAAGAGATGATGTGTTTCCTTACGTCAAGGAGGACCCTTTCAAGCCTACAG
CGGCCATTGTGAAGTTCTATGTTCTGTACGAAAAGTGGCGTAGAGCTGATGTTCCAAAGG
CTGATTCAGTTATAGACTACTTCAAAAACATCACAGATGCAAATGGAGTTATTATTCATC
CGTCTGGGGTCGAACTTTTGATCCATTCGTCCATTGATGAGCTGGCTTCATGTTATGGTG
ACAAACAAGGGAAAAAGTACCGATCATGGGTGGACAGACTAGTTATCTTGCAGACTGCTT
CTGACAGTTGGCTCGTGAGATTCGACTTGTGGGAGGCAGAAGGTGATGCGTGGGTGTGCT
GTTTTACAACTCTTGCGCTGAGTGTAAAGCCTGAAAACCCCGGGGGTTTCGTGGTAACAC
ACATCCACAAGACATGGCGCAAAGAATATCCCGGGGTTGAGCAGTCGTCCAAACTCTAGA
CCGCCGGCCGGCGCATGGGGAGGAGTTTTTTCTTCTTGAGGATGAAATAAGAAATCGTAC
CGGAAGCATGTGAATTTCTTTTTTACTTGTTCATATAATGTTAATAAGTGCTCCCAGACA
CATACATATACTAGACTGGATGATGTCTCTTGATGCTGTCATGAGAGGCTAAACTAAAGT
AAATGACCCCAGTCCCAGTATATATACTAGTTGGATGTGCTACGTGTTAAAAAAAAAAAA
AAAAACCCCAGATACATTCATTTTCATCAAAAAAGAAAAAAAAAAA

Homology of Contig U35_15010 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g27880.1	424	0.0	protein\|sucrose-phosphatase, putative, expressed
Brachypodium v1_2	Bradi1g55300.1	423	0.0
Arabidopsis v10	AT2G35840.1	422	1e-171	Sucrose-6F-phosphate phosphohydrolase family protein \| chr2:15053952-15055776 FORWARD LENGTH=422