barSeed - Barley Seed Development Database

Probe CUST_26436_PI390587928

Source Contig U35_38436

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26436_PI390587928	Hv_44K_v2	CAAAGAGATGGAGAATTCTCGGACAGGTACTGCTGAATCAATAGCAGCATGCCAGAAACT	593	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360972	2390	2e-24	1927 - 1986	100	60 / 60	plus	ABC00328
MLOC	MLOC_27662.1	1820	2e-24	1362 - 1421	100	60 / 60	plus	None
MLOC	MLOC_27662.5	2099	2e-24	1343 - 1402	100	60 / 60	plus	None
MLOC	MLOC_27662.2	1802	2e-24	1362 - 1421	100	60 / 60	plus	None
MLOC	MLOC_27662.3	2456	2e-24	1362 - 1421	100	60 / 60	plus	None
MLOC	MLOC_27662.4	2102	2e-24	1361 - 1420	100	60 / 60	plus	None
JLOC1	JLOC1_18655.5	2482	8e-25	1360 - 1419	100	60 / 60	plus
JLOC1	JLOC1_18655.4	1838	8e-25	1360 - 1419	100	60 / 60	plus
JLOC1	JLOC1_18655.3	2147	8e-25	1360 - 1419	100	60 / 60	plus
JLOC1	JLOC1_18655.2	1828	8e-25	1360 - 1419	100	60 / 60	plus
JLOC1	JLOC1_18655.1	2106	8e-25	1362 - 1421	100	60 / 60	plus
Harvest21	ABC34400	735	3e-25	594 - 653	100	60 / 60	plus
Harvest35	U35_38436	735	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (735 bp)

>U35_38436 735 Hv_44K_v2
TTTTCGCCCACTGGTCTATTGAATTCAATCAAGTTGAGAAGAGAAGGCCCTCTTTCCCTC
ATGACAGAGCATAAAGAGGCGCTATGGAGCACATATGTGCCAACTACAAAGCCTGACACC
TCTGTTCTAAATAGACTCATTGATGCCGGCGTGTCACCTAGAATTGAGGAGTCCATGTCA
GTTGTCAATAATGAGATATTGAGGCGGCATTTCTTGGAGCTAACGACCAACTTCCTTGCA
CCTTTTGGGCCATATCTGAGAACCACGACACCACCGGAAGGGAGTTCTCCATTCGTTGAT
CCACCACTACTTCCACCATTTCACGCAGATGAGTTTGTCAATGGTTTGGCTTCTAGAGGC
CCAGGGAAATTTTTGTCGAAAAGGATGAAGTCCAATTGGTTGGATTTATATAGAAAATTC
TTGGAAGGCCCTAACTTCATGCCTTGGTTCCGACAAAGACGTTCTGCTGCAGAGCAAGAT
CAGCTAAGGTTATGGAGGCAAGCTCGCATGAATGTTGATATCGAGAAGTTAATGTCAAAG
ATGTCTGAGTTGGAGAGGATTGATTCTTTTAATGTTATTGAGCGGTATCTTCTCAAAGAG
ATGGAGAATTCTCGGACAGGTACTGCTGAATCAATAGCAGCATGCCAGAAACTGAAGGCA
GACCTCCAGGCAGCATTCAGTGTCCTNCCAAAGACATGCAGCAGCTGCTGCTTTCCAACC
CTAACGAGCCGGGCT

Homology of Contig U35_38436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15390.1	637	6e-148	protein\|GA17271-PA, putative, expressed
Brachypodium v1_2	Bradi1g67540.1	630	6e-151
Arabidopsis v10	AT1G73930.1	623	5e-109	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 290 Blast hits to 263 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 30; Plants - 49; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). \| chr1:27795347-27797534 REVERSE LENGTH=623