barSeed - Barley Seed Development Database

Probe CUST_26433_PI390587928

Source Contig U35_38439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26433_PI390587928	Hv_44K_v2	GGGATGAGATGATAGACAAGGGGTTCAACCCAACACTTTTGACATATAATGCAATGATAC	641	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.040	1.278	1.364	1.038	0.627	0.555
Raw	30.308	57.954	53.921	68.179	13.725	13.168

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_980.2	2313	2e-24	949 - 1008	100	60 / 60	minus	None
MLOC	MLOC_980.1	2400	2e-24	1036 - 1095	100	60 / 60	minus	None
JLOC1	JLOC1_612.1	1999	8e-25	638 - 697	100	60 / 60	minus
Harvest21	ABC34404	701	3e-25	642 - 701	100	60 / 60	plus
Harvest35	U35_38439	701	3e-25	642 - 701	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_38439 701 Hv_44K_v2
GCTGCATTGTCGGGAAGAAATGGTAGCGAGGGGGGTTTCCATGACAGTCGCGACATACAA
TTTGTTTGTGCACGCGTTGTTCATGGAGGGCCGTGCTGCGGAGGCGCATGCATTGGTTGA
GGAGATGGTTGGAAAGGGGCTTGCACCAGATGCCTTCACGTACAATATATTGATCAACGG
TTACTGCAAAGAGGGTAAGGAGAAGAAAGCAATGAAGATGTTTGAAAATATGGCTGCCAA
AGGGATTCGTACGACCGTGGTGACATATACGTCACTGATATATGCCTTGTCCAAGAAGGG
GATGGTTCAGGAGGCCGATAGGCTGTTCAATGAGGCTGTGAGGAGAGGCATCAGGCCTGA
CCTTGTCATGTACAATGCCCTGATCAATAGCCACTGCACTGGTGGAGATATGGACCGGGC
GTTCGAGATCATGGGAGAAATGGAGAAGAAGAGGATCACACCTGATGACGTGACATACAA
TACTCTGATGAGGGGGCTGTGCTTGTTGGGGCGTCTTGATGAAGCACGTGGGCTCATTGA
CAAGATGACAAAGAGAGGTATCAAGCCAGACCTTGTGAGTTACAACACCCTGATCAGCGG
CTACAGCATGAAGGGTGACATCAAGGATGCTCTGAAGGTTCGGGATGAGATGATAGACAA
GGGGTTCAACCCAACACTTTTGACATATAATGCAATGATAC

Homology of Contig U35_38439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40130.1	456	3e-130	protein\|Rf1, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi5g13435.1	525	1e-144
Arabidopsis v10	AT2G15630.1	627	4e-83	Pentatricopeptide repeat (PPR) superfamily protein \| chr2:6814521-6816404 FORWARD LENGTH=627