barSeed - Barley Seed Development Database

Probe CUST_26432_PI390587928

Source Contig U35_14480

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26432_PI390587928	Hv_44K_v2	ATAATAGAAACGGCCTTGGTGTCGTTTCTGAAATAATAACAGTAACATCCTTCCTTCAAA	1555	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.666	0.790	0.951	2.874	2.056	1.155
Raw	4.236	7.800	9.891	49.016	11.639	7.485

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50162.7	3126	6e-24	92 - 150	100	59 / 59	minus	ABC00481 ABC00602 ABC00823 ABC23306
MLOC	MLOC_50162.5	3109	6e-24	92 - 150	100	59 / 59	minus	ABC00481 ABC00602 ABC00823 ABC23306
MLOC	MLOC_50162.6	3105	6e-24	92 - 150	100	59 / 59	minus	ABC00481 ABC00602 ABC00823 ABC23306
MLOC	MLOC_50162.8	3041	6e-24	77 - 135	100	59 / 59	minus	ABC00481 ABC00602 ABC00823 ABC23306
MLOC	MLOC_50162.3	3220	6e-24	119 - 177	100	59 / 59	minus	ABC00481 ABC00602 ABC00823 ABC23306
MLOC	MLOC_50162.4	3396	6e-24	108 - 166	100	59 / 59	minus	ABC00481 ABC00602 ABC00823 ABC23306
MLOC	MLOC_50162.1	6931	6e-24	957 - 1015	100	59 / 59	minus	ABC00481 ABC00602 ABC00823 ABC23306
MLOC	MLOC_50162.2	6073	6e-24	150 - 208	100	59 / 59	minus	ABC00481 ABC00602 ABC00823 ABC23306
JLOC1	JLOC1_32035.2	3314	3e-24	3042 - 3100	100	59 / 59	plus
JLOC1	JLOC1_32035.1	3290	3e-24	3018 - 3076	100	59 / 59	plus
Harvest21	ABC00481	514	1e-24	433 - 491	100	59 / 59	plus	ABC00481
Harvest35	U35_14480	1629	3e-25	1556 - 1615	100	60 / 60	plus

Contig Sequence (1629 bp)

>U35_14480 1629 Hv_44K_v2
TGGCATTGTTCGCAAGTGGATCTCTCGTTTTGAAGTCTGGCCGTACCTGGAGACTTTCAC
TGAAGATGTGGCACATGAGATTTCTGGAGAGCTCCAGGCCAATCCCGATCTCATCATCGG
AAACTACAGCGATGGAAACCTTGTTGCTTGCCTGCTTGCGCACAAGATGGGTGTTACTCA
TTGTACCATTGCGCACGCGCTTGAGAAAACCAAGTACCCCAACTCTGACCTCTACTGGAA
GAAGTTTGAGGACCACTACCACTTCTCATGCCAGTTCACTACGGACCTGATTGCCATGAA
CCATGCCGACTTCATCATCACAAGCACCTTCCAAGAGATTGCTGGAAACAAGGACACCGT
CGGTCAGTACGAGTCTCACATGGCATTCACAATGCCTGGAATGTACCGTGTTGTCCATGG
TATCGATGTTTTCGACCCCAAGTTTAACATAGTCTCACCTGGTGCGGACATGTCCATCTA
CTTCCCATACTCCGAGTCACAGAGGAGGCTCACCTCCCTCCACCCAGAGATTGAGGAGCT
GCTCTACAGTAATGTCGACAACAATGAGCACAAGTATGTGCTCAAGGACAGGAACAAGCC
AATCATCTTCTCCATGGCTCGTTTGGACCGTGTCAAGAACTTGACTGGTCTGGTTGAGCT
GTATGGCAAGAACCCTCGCTTGCAGGAGCTTGTTAACCTTGTGGTTGTCTGTGGTGACCA
TGGCAATCCATCAAAGGACAAGGAGGAGCAGGCTGAGTTCAAGAAGATGTTCGACCTTAT
TGAGCAGTACAACCTGAATGGCCATGTCCGCTGGATCTCCGCCCAGATGAACCGTGTCCG
TAATGCTGAGCTCTACCGTTACATCTGCGACACCAAGGGTGCCTTTGTGCAGCCTGCTTT
CTATGAGGCTTTCGGGCTTACTGTCATCGAGGCCATGACCTGCGGTCTTCCTACCTTTGC
AACTGCATATGGTGGTCCTGCTGAGATCATCGTGAACGGTGTGTCCGGCTACCACATTGA
CCCTTACCAGGGCGACAAGGCCTCCGCTCTGCTTGTCGAGTTCTTTGAGAAGTGCGAGGT
CGACCCCAGCCACTGGACCAAGATCTCACAGGGAGGGCTTCAGCGTATTGAGGAGAAATA
CACCTGGAAGCTTTACTCCGAGAGGCTGATGACCCTCACCGGTGTGTACGGGTTCTGGAA
GTACGTCTCCAACCTCGAGAGGCGCGAGACCCGCCGCTACCTTGAGATGCTGTACGCCCT
CAAGTACCGCACCATGGCCAGCACCGTTCCATTGGCTGTCGAGGGAGAGTCCTCGAGCAA
GTGATCTGGCCACCTCCTGGCTGGAAGAAGGGTTACCTGGATTTCTGCAAAGATTGAGAT
TTGAGAATGCCTTGGTTTGCTTCCTAGGCTCTGCTCTTTTTAAGATTTAAGATCGAGTTG
GTGTGCTAGTTTGATTTTGTAGTGGGAGTGAGTCAGTGAGTCGAGACAGAGGAAAATGTG
GTGTGTGCCGCCCAGTTGGCTGGTGCTTGTCGTGTTTCTCGGATGTTACCGTTGAATAAT
AGAAACGGCCTTGGTGTCGTTTCTGAAATAATAACAGTAACATCCTTCCTTCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_14480 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g28330.4	817	protein\|sucrose synthase, putative, expressed
Brachypodium v1_2	Bradi1g60320.2	816
Arabidopsis v10	AT3G43190.1	808	\| Symbols: SUS4, ATSUS4 \| sucrose synthase 4 \| chr3:15179204-15182577 REVERSE LENGTH=808